View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_24 (Length: 240)
Name: NF6273_low_24
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 1223608 - 1223387
Alignment:
| Q |
19 |
gatccaccgtaattaggatcttggacccaccatagtgctaaaatgtagcggtgctattgttacatgatgcattatttcgagtgaaatgttgtcgaatagc |
118 |
Q |
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| T |
1223608 |
gatccaccgtaattaggatcttggacccaccatagcgctaaaatgtagtggtgctattgttacatgatgcattatttcgagtgaaatgttgtcgaatagc |
1223509 |
T |
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| Q |
119 |
agctatagaggcgcaatagcgtgtaatgtagtttgaacaaactattgttttttgtgatctgcgattgacaacacttgttattggattaatttcttgagtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1223508 |
agctatagaggcgcaatagcgtgtaatgtagtttgatcaaactattgttttttgtgatctgcgattgacaacacttgttattggattaatttcttgagtc |
1223409 |
T |
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| Q |
219 |
ggttgtgcaacatcggtttctt |
240 |
Q |
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| T |
1223408 |
ggttgtgcaacatcggtttctt |
1223387 |
T |
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