View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_25 (Length: 239)
Name: NF6273_low_25
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47068808 - 47068586
Alignment:
| Q |
1 |
tcttggcagtccaaaacttatccatcaaaatgttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatggagatacaagatccctct |
100 |
Q |
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| T |
47068808 |
tcttggcagtccaaaacttatccatcaaaatgttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatggagatacaagatccctct |
47068709 |
T |
|
| Q |
101 |
agcaatatccagtgctattcttactctctcattccaatctgggcgtctttgatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47068708 |
agcaatatccagtgctattcttactctctcattccaatctgggcgtctttgatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataa |
47068609 |
T |
|
| Q |
201 |
accagaagcctttttgaaccctc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47068608 |
accagaagcctttttgaaccctc |
47068586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47075522 - 47075744
Alignment:
| Q |
1 |
tcttggcagtccaaaacttatccatcaaaatgttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatggagatacaagatccctct |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| || ||||| ||||||||||||||| |||||||||| |
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| T |
47075522 |
tcttggcagtccaaaactcatccatcaaaatgttttgaggctttatgtcacaatgaatgattggtgcctcacattcttcatggagatacgagatccctct |
47075621 |
T |
|
| Q |
101 |
agcaatatccagtgctattcttactctctcattccaatctgggcgtctttgatcaccaaaaagaagctttccaagtgatccgttgctcatgtattcataa |
200 |
Q |
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|||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
47075622 |
agcaatgtccagtgccattcttactctctcatcccaatctggacgtctttgatcaccaaacagaagcttttcaagtgatccgttgctcatgtattcataa |
47075721 |
T |
|
| Q |
201 |
accagaagcctttttgaaccctc |
223 |
Q |
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|||| |||||||||||||||||| |
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| T |
47075722 |
accaaaagcctttttgaaccctc |
47075744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 4130637 - 4130588
Alignment:
| Q |
33 |
ttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatg |
82 |
Q |
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||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
4130637 |
ttttgaggctttatgtcgcaatgaatgataggagtgtcacactcttcatg |
4130588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 4107456 - 4107407
Alignment:
| Q |
33 |
ttttgaggctttaagtcgcaatgaatgattggagcatcacactcttcatg |
82 |
Q |
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||||||||||||| ||| ||||||||||| |||| |||||||||||||| |
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| T |
4107456 |
ttttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatg |
4107407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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