View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_27 (Length: 239)
Name: NF6273_low_27
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 27987167 - 27987385
Alignment:
| Q |
4 |
taatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggcaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27987167 |
taatttatctattttagggcattattctaatttatccttttccgagtttcagacatgtcattcaattgcgttttgagtatcaatgcctacttaaggcaag |
27987266 |
T |
|
| Q |
104 |
acacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgttcaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27987267 |
acacgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgttcaaaa |
27987366 |
T |
|
| Q |
204 |
aagcacgtaagatatagtt |
222 |
Q |
| |
|
||||||| ||||||||||| |
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| T |
27987367 |
aagcacggaagatatagtt |
27987385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 27997498 - 27997278
Alignment:
| Q |
2 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||| | | |
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| T |
27997498 |
gttaatttatctattttagggcattattctaaattatccttttccgagtttcagacatggcattcaatttcattttgagcatcaatgcctacttaaagaa |
27997399 |
T |
|
| Q |
102 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgttcaa |
201 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
27997398 |
agacacatttttccagtaaaaaattattgtcacggatataggcaagcaaaggacagaggtttgagctttaaattgtaccatacaaacatttagtgttcat |
27997299 |
T |
|
| Q |
202 |
aaaagcacgtaagatatagtt |
222 |
Q |
| |
|
|||||||| |||||||||||| |
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| T |
27997298 |
aaaagcacataagatatagtt |
27997278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 26459887 - 26460060
Alignment:
| Q |
2 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
26459887 |
gttaatttatctattttagggcattattctaatttatccttttccgagtttcagacatggcattcaattgcgttttgagcatcaacgcctacttaaggca |
26459986 |
T |
|
| Q |
102 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
175 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26459987 |
agacatgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagctttaaatt |
26460060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 27988109 - 27987892
Alignment:
| Q |
2 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
27988109 |
gttaatttatctattttagggcatt---ctaatttatcctttttcgagtttctgacatggcattcaattgcgttttgagcatcaattcctacataaggcg |
27988013 |
T |
|
| Q |
102 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgttcaa |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||||| ||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
27988012 |
agacacgtttttacagtaaaaaattattttcatggatataagcaagcgaatgatagaggtttgagctttaaattgtaccgtacaaacatttggtgttcat |
27987913 |
T |
|
| Q |
202 |
aaaagcacgtaagatatagtt |
222 |
Q |
| |
|
|||| || | ||||||||||| |
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|
| T |
27987912 |
aaaatcaagaaagatatagtt |
27987892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 27996604 - 27996754
Alignment:
| Q |
48 |
agtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggcaagacacgtttttccagtaaaaaattattgtcacgaatataggcaag |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
27996604 |
agtttcagacatgacattcaattgcgttttgagcatcaatgcctacttaaggcaagacatgtttttccagcaaaaaattattgtcacgaatataggcaag |
27996703 |
T |
|
| Q |
148 |
cgaaggacagaggtttgagatttaaattgtaccatacaaacatttggtgtt |
198 |
Q |
| |
|
|||| || ||||||||||| |||||||||||| | ||||| |||||||||| |
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|
| T |
27996704 |
cgaaagatagaggtttgagctttaaattgtacaacacaaaaatttggtgtt |
27996754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 26460104 - 26460148
Alignment:
| Q |
178 |
accatacaaacatttggtgttcaaaaaagcacgtaagatatagtt |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||| |
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|
| T |
26460104 |
accatacaaacatttggtgttcataaaagcatggaagatatagtt |
26460148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 29678670 - 29678843
Alignment:
| Q |
2 |
gttaatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
29678670 |
gttaatttatctattttagggcattattctaatttatccttttccgagtttcagacatggcattcaattgcgttttgagcatcaacgcctacttaaggca |
29678769 |
T |
|
| Q |
102 |
agacacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
175 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29678770 |
agacatgtttttccagtaaaaaattattgtcacggatataggcaagcgaaggacagaggtttgagctttaaatt |
29678843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 29678887 - 29678931
Alignment:
| Q |
178 |
accatacaaacatttggtgttcaaaaaagcacgtaagatatagtt |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||| |
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|
| T |
29678887 |
accatacaaacatttggtgttcataaaagcatggaagatatagtt |
29678931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 11490750 - 11490580
Alignment:
| Q |
5 |
aatttatctattttagggcattattctaatttatccttttcggagtttcagacatggcattcaattgcgttttgagtatcaatgcctacttaaggcaaga |
104 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
11490750 |
aatttatctattttggtgcattattttaatttatccttttctgagtttcaggcatggcattcaattgcgttttgaacatcaacgcctacttaaggcaaga |
11490651 |
T |
|
| Q |
105 |
cacgtttttccagtaaaaaattattgtcacgaatataggcaagcgaaggacagaggtttgagatttaaatt |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| ||| |||| |
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|
| T |
11490650 |
cacgtttttccagtaaaaaattattgtcatggatatagtcaagcgaaagacagaggtttgagctttgaatt |
11490580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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