View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_3 (Length: 472)
Name: NF6273_low_3
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 121 - 336
Target Start/End: Complemental strand, 44476374 - 44476167
Alignment:
| Q |
121 |
agaacagagatgatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagacaaa |
220 |
Q |
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| T |
44476374 |
agaacagagatgatactaaaatttgttatattaaaaatattct---agttctatgcaattaactaaaattagtgtccatatgtgtagtttaagagacaaa |
44476278 |
T |
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| Q |
221 |
tattaattaatctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgtttannnnnnnagttattagctggtaaa |
320 |
Q |
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| T |
44476277 |
tattaat----ctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgttta-tttcttagttattagctggtaaa |
44476183 |
T |
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| Q |
321 |
aacaaacagcaattaa |
336 |
Q |
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| T |
44476182 |
aacaaacagcaattaa |
44476167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 44476629 - 44476521
Alignment:
| Q |
15 |
aatatccaaaactcatttctgactaatgtatggtccgaccaannnnnnnngttaaacaagtataattagttgtattttcttgatgaaggtatagcacgat |
114 |
Q |
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| T |
44476629 |
aatatccaaaactcgtttctgactaatgtatggtccgaccaattttttttgttaaacaagtataattagttgtatttttttgatgaaggtatagcacgat |
44476530 |
T |
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| Q |
115 |
acgagaaga |
123 |
Q |
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| T |
44476529 |
gtgagaaga |
44476521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 44471777 - 44471698
Alignment:
| Q |
132 |
gatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagac |
217 |
Q |
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| T |
44471777 |
gatactagaatttgttatattaaaa----tattatagttctatgcaattaactaaaattagtctc--tatatgtagtgtaagagac |
44471698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 44476105 - 44476072
Alignment:
| Q |
417 |
ttattgaagatttgacctttgacaataatcggcg |
450 |
Q |
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| T |
44476105 |
ttattgaagatttgacctttgacaataatcggcg |
44476072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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