View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6273_low_31 (Length: 214)
Name: NF6273_low_31
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 7828976 - 7828796
Alignment:
| Q |
16 |
aatataacatgtaaagtcaagatgcttgaatttgtgtgccaaagctaattttgtgtgttaagaaattaaccattcaaggcatggagatctatttaagcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828976 |
aatataacatgtaaagtcaagatgcttgaatttgtgtgccaaagctaattttgtgtgttaagaaattaaccattcaaggcatggagatctatttaagcgg |
7828877 |
T |
|
| Q |
116 |
ccaacgtcttctcaccaacaatctttcatacgcattgatcatggtcaaacacatgaccacatgtttaaaagatcctatgtg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828876 |
ccaacgtcttctcaccaacaatctttcatacgcattgatcatggtcaaacacatgaccacatgtttaaaagatcctatgtg |
7828796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University