View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6273_low_4 (Length: 462)

Name: NF6273_low_4
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6273_low_4
NF6273_low_4
[»] chr5 (13 HSPs)
chr5 (246-447)||(31395344-31395545)
chr5 (8-161)||(31395630-31395795)
chr5 (14-110)||(40843384-40843480)
chr5 (14-98)||(31476002-31476086)
chr5 (8-83)||(31279540-31279615)
chr5 (16-74)||(31332169-31332227)
chr5 (16-74)||(31380954-31381012)
chr5 (13-83)||(31505956-31506026)
chr5 (14-74)||(31643941-31644001)
chr5 (16-74)||(31368542-31368600)
chr5 (17-74)||(31317328-31317385)
chr5 (29-101)||(31288429-31288501)
chr5 (29-101)||(31378649-31378721)
[»] chr3 (1 HSPs)
chr3 (8-101)||(25708380-25708473)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 246 - 447
Target Start/End: Complemental strand, 31395545 - 31395344
Alignment:
Q  246 ctaaagcacatacctttgtgaaatattttttatatctaggatcgagtgtattcccataatcgttagccatacgattaatcctctaaatatgtaatgtata 345  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31395545 ctaaagcacatacctttgtgaaatattttttatatctcggatcgagtgtattcccataatcgttagccatacgattaatcctctaaatatgtaatgtata 31395446  T
Q  346 gagaagcaatatatttaattctatactcatcatcagaattcaaattgcaaacatatttttctggtccaattattaaccagacaatatttttatggtccaa 445  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31395445 gagaagcaatatatttaattctatactcatcatcagaattcaaattgcaaacatatttttctggtccaattattaaccagacaatatttttatggtccaa 31395346  T
Q  446 tt 447  Q
    ||    
T  31395345 tt 31395344  T

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Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 31395795 - 31395630
Alignment:
Q  8 gagcagagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttggacgagc- 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31395795 gagctgagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttggacgagca 31395696  T
Q  107 -----------atgttctctctttaatgcaataatttagagtacctacttttgaagatatttattt 161  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31395695 tgtctacagtcatgttctctctttaatgcaataatttagagtacctacttttgaagatatttattt 31395630  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 40843384 - 40843480
Alignment:
Q  14 agagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttggacgagcatgt 110  Q
    |||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||| || || ||||||||    
T  40843384 agagcataacaaaccagtccaacagcagctgaagcaaatcccacaaatctccatacctttgtctgcaacagccacctctgaactttgatgagcatgt 40843480  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 31476002 - 31476086
Alignment:
Q  14 agagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaattt 98  Q
    |||||||||||||  ||||||||| ||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||    
T  31476002 agagcataacaaagcagtccaacagcagctgaagcaaagcccacaaatctccatacctttgtctgcatcagccacctctgaattt 31476086  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 31279540 - 31279615
Alignment:
Q  8 gagcagagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatca 83  Q
    |||| ||||||||||||||| |||||||||||| |||||||| | || ||||||||||| || ||||  |||||||    
T  31279540 gagctgagagcataacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacacttttggctgcatca 31279615  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 31332227 - 31332169
Alignment:
Q  16 agcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 74  Q
    |||||||||||  ||||||||||||| ||||||| | |||||||||||||| |||||||    
T  31332227 agcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttg 31332169  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 31381012 - 31380954
Alignment:
Q  16 agcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 74  Q
    |||||||||||  ||||||||||||| ||||||| | |||||||||||||| |||||||    
T  31381012 agcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttg 31380954  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31505956 - 31506026
Alignment:
Q  13 gagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatca 83  Q
    ||||||||||||||  | |||||||||||||||||   | |||| |||| |||||||||||||||||||||    
T  31505956 gagagcataacaaagcaatccaacaacagctgaagtgaagccaataaatgtccatacctttgtatgcatca 31506026  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 31643941 - 31644001
Alignment:
Q  14 agagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 74  Q
    |||||||||||||  |||||||||| || ||||||| | || |||||||||||||||||||    
T  31643941 agagcataacaaagtagtccaacaatagatgaagcaaagcccacaaatctccatacctttg 31644001  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 31368600 - 31368542
Alignment:
Q  16 agcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 74  Q
    |||||| |||||||||||||||| || ||||||| | || ||||||||||| |||||||    
T  31368600 agcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttg 31368542  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 31317385 - 31317328
Alignment:
Q  17 gcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttg 74  Q
    ||||| |||||||||||||||| || ||||||| | || ||||||||||| |||||||    
T  31317385 gcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttg 31317328  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 31288501 - 31288429
Alignment:
Q  29 agtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttgga 101  Q
    ||||||||||||||||||||| | || ||||||||||| || ||||  ||||||| ||| ||||  |||||||    
T  31288501 agtccaacaacagctgaagcaaagcctacaaatctccacacttttggctgcatcaaccatctctatatttgga 31288429  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 31378721 - 31378649
Alignment:
Q  29 agtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttgga 101  Q
    |||||||||||||||| |||| |||| | ||||||||| |||||||  ||||||| ||| |||  ||||||||    
T  31378721 agtccaacaacagctgcagcaaatcccagaaatctccacacctttggctgcatcatccatctccaaatttgga 31378649  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 25708473 - 25708380
Alignment:
Q  8 gagcagagagcataacaaacaagtccaacaacagctgaagcacatccaacaaatctccatacctttgtatgcatcagccacctctgaatttgga 101  Q
    |||| |||||||||||| || |||||||||| |||||||||| | ||||||||||||||||| |||   ||||||||||| ||| |||||||||    
T  25708473 gagctgagagcataacagactagtccaacaatagctgaagcaaaaccaacaaatctccatactttttcctgcatcagccatctcagaatttgga 25708380  T

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