View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_5 (Length: 458)
Name: NF6273_low_5
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 46761040 - 46761203
Alignment:
| Q |
169 |
tatctaaccggattctcgtgcatatttgcaaacacgcatgcttttaagttttatcctgtatttgcaatcacgggcaaaagcatatgaagaactttcactc |
268 |
Q |
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| T |
46761040 |
tatctaaccggattcttgtgcatatttgcaaacacgcatgcttttaagttttatcctgcatttgcaatcacgggcaaaagcatatgaagaactttcactc |
46761139 |
T |
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| Q |
269 |
atgtcatgtttccaaggtgatagagaaattttcatcaagtttaagtacaaactatgaaaaatat |
332 |
Q |
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| T |
46761140 |
atgtcatgtttccaaggtgatagagaaattttcatcaagtttaagtacaaactatgaaaaatat |
46761203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 46760920 - 46760960
Alignment:
| Q |
48 |
atattgaataaatactcaggtggttttgattaatatcaacg |
88 |
Q |
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| T |
46760920 |
atattaaataaatactcaggtggttttgattaataccaacg |
46760960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 332 - 447
Target Start/End: Complemental strand, 40310982 - 40310867
Alignment:
| Q |
332 |
tgaagtgtttcgctattccccaggtcatagtgagtcatcatttgggaattggctagctgatcaggcgagagtgtttcagagtttgccaactgatggttgg |
431 |
Q |
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| T |
40310982 |
tgaagtgtttcactattccccaggtcatagtgagtcatcatttgggaattggctagctgatcaggcgagagtgtttcagagtttgccaactgatggttgg |
40310883 |
T |
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| Q |
432 |
caagtgcctgatgatg |
447 |
Q |
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| T |
40310882 |
caagtgcctcatgatg |
40310867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 332 - 440
Target Start/End: Complemental strand, 40296020 - 40295912
Alignment:
| Q |
332 |
tgaagtgtttcgctattccccaggtcatagtgagtcatcatttgggaattggctagctgatcaggcgagagtgtttcagagtttgccaactgatggttgg |
431 |
Q |
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| T |
40296020 |
tgaagtgtttcaccatttgccaggtcatactgagacatcatttgggaattggctagctgatcaggcgagagtgtttcagagtttggcaactgatggttgt |
40295921 |
T |
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| Q |
432 |
caagtgcct |
440 |
Q |
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| T |
40295920 |
ctagtgcct |
40295912 |
T |
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