View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6273_low_6 (Length: 443)
Name: NF6273_low_6
Description: NF6273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6273_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 30238514 - 30238089
Alignment:
| Q |
17 |
cagatcttcctttagaaattgggtggtaagtcttgcttgaaaatttatcacttgtgaatatcaatttgtgtcacnnnnnnna---caatagttatttatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
30238514 |
cagatcttcctttagaaattgggtggtaagtcttgcttgaaaatttatcacttgtgaatatcaatttgtgtcactttttttattacaatagttatttatc |
30238415 |
T |
|
| Q |
114 |
aaattaattaatggtcattgaatttgtaatcagattcgagcttattatgaaagaaaagcactagcacaatcactgaatgataccaaaacagcagtgcaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238414 |
aaattaattaatggtcattgaatttgtaatcagattcgagcttattatgaaagaaaagcactagcacaatcactgaatgataccaaaacagcagtgcaac |
30238315 |
T |
|
| Q |
214 |
aacttcacaaattagcaagtnnnnnnnnnnnnnnnataataataattgtgacccttttggtgatggaagttgctacaatgaagataatattgttctgtat |
313 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238314 |
aacttcacaaattagcaagttgtgttgtgtgtgtgataataataattgtgacccttttggtgatggaagttgctacaatgaagataatattgttctgtat |
30238215 |
T |
|
| Q |
314 |
cacacaaactgttttaataggagttgcattccaaggcacttgcaaaactgtcttggaagctatcatctttgtcttcatcatgcacccttttgacattgga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30238214 |
cacacaaactgttttaataggagttgcattccaaggcacttgcaaaactgtcttggaagctatcatctttgtcttcatcatgcacccttttgacattgga |
30238115 |
T |
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| Q |
414 |
gaccgttgtgtcattgatgatgtcca |
439 |
Q |
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||||||||||||||||||| |||||| |
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| T |
30238114 |
gaccgttgtgtcattgatggtgtcca |
30238089 |
T |
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