View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6275_low_1 (Length: 571)
Name: NF6275_low_1
Description: NF6275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6275_low_1 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 22 - 560
Target Start/End: Complemental strand, 11400 - 10864
Alignment:
| Q |
22 |
aagagatttagacgcaagaacacattttaggaattgcgaatcgcctgaagggatatgacccttttcacgttttgcctcgatctcacaannnnnnnnattg |
121 |
Q |
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| T |
11400 |
aagagatttagacgcaagaacacattttaggaattgcgaatcgcctgaagggatatgacccttttcaccttttgcctcggtctcacaattttttttattg |
11301 |
T |
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| Q |
122 |
tggcatatgaatatccttagacatctgcttccgaggttgtttatctacgagtgtcctatggtgaaacaattagaacaacaataatacaatctttcgtaga |
221 |
Q |
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| T |
11300 |
tggcatatgaatatccttagacatctgcttccgaggttgtttatctacgagtgtcctatggtgaaacaattagaccaacaataatacaatctttcgtaga |
11201 |
T |
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| Q |
222 |
cgatatatcaacataaaatgcaaaaccttcgcacatcaccaacacttcatcaaatattctctaggatatgtcaatgtcgacaagaatgccagcgtagtac |
321 |
Q |
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| T |
11200 |
cgatat--caacataaaatgcaaaaccttcgcgcatcaccaacacttcatcaaatattctctaggataggtcaatgtcgacaagaatgccagcgtagtac |
11103 |
T |
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| Q |
322 |
ctaccctgcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttga |
421 |
Q |
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| T |
11102 |
ctaccccgcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttga |
11003 |
T |
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| Q |
422 |
aatcatgttcccactttgagaggcacaagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgacga |
521 |
Q |
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| T |
11002 |
aatcatgttcccactttgagaggcataagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgatga |
10903 |
T |
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| Q |
522 |
gagatcacaagaggttaaagatttgtttcccttattcat |
560 |
Q |
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| T |
10902 |
gagatcacaagaggttaaagatttgtttcccttattcat |
10864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 15698022 - 15697967
Alignment:
| Q |
472 |
atcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatc |
527 |
Q |
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| T |
15698022 |
atcaacctccattgtccaaaatccttccaaattgtttgcagcttcgacgagagatc |
15697967 |
T |
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