View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6275_low_3 (Length: 389)
Name: NF6275_low_3
Description: NF6275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6275_low_3 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 8041897 - 8041542
Alignment:
| Q |
1 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8041897 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
8041798 |
T |
|
| Q |
101 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgacccatgaaagaacaagtatagccaatcctggacccctgagtagagtaaaacaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
8041797 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaaggacaagtatagccaaacctggacccctgagtagaataaaacaaatat |
8041698 |
T |
|
| Q |
201 |
tgattcattaaaggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttg |
300 |
Q |
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|
||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8041697 |
tgattcattaaaggaaaaagcttgttggtgcaacatgttagtgcatgaatagcaacgaattaatattggtctttagatatacttgagattataagctttg |
8041598 |
T |
|
| Q |
301 |
ttgactttcatttatttgaaaaatataataacactagcttcctttat-gtgtgcca |
355 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
8041597 |
ttgactttcatttatttgaaacatataataacactagcttcctttatcgtgtgcca |
8041542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7971791 - 7972002
Alignment:
| Q |
1 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7971791 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
7971890 |
T |
|
| Q |
101 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgacccatgaaagaacaagtatagccaatcctggacccctgagtagagtaaaacaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7971891 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatgaaagaacaagtatagccaatcctggacccctgattagagtaaaacaaatat |
7971990 |
T |
|
| Q |
201 |
tgattcattaaa |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
7971991 |
tgattcattaaa |
7972002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 8031987 - 8031834
Alignment:
| Q |
32 |
cctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgt |
131 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||| ||| |||||| ||||||||| |||| ||| |||||||||||||||||||||||||| || | |
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|
| T |
8031987 |
cctaacttttcgccaaacgcatgttgacctaattcatggtatctatcaaaacgttttcccggaatcatttcatgcatctcaaccatttgccacaatgtat |
8031888 |
T |
|
| Q |
132 |
acagtgtgatgacccatgaaagaacaagtatagccaatcctggacccctgagta |
185 |
Q |
| |
|
|||| |||||| |||||| | | |||||||| ||| |||||||||||||||| |
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|
| T |
8031887 |
acagagtgatggtccatgataagagaagtatagtcaaacctggacccctgagta |
8031834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 7979359 - 7979519
Alignment:
| Q |
1 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
100 |
Q |
| |
|
||||||||||||||||| |||||| | | ||||| |||| |||||||||||||| |||||||||| ||| |||||| |||||||| |||||||| |
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| T |
7979359 |
cacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatcaaagcgttttcccggaaccatt |
7979458 |
T |
|
| Q |
101 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgacccatgaaagaacaagta |
161 |
Q |
| |
|
||||||||||||||||||||||| | ||||| | |||||||| ||||||||||||||||| |
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|
| T |
7979459 |
tcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatgaaagaacaagta |
7979519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 41382190 - 41382390
Alignment:
| Q |
1 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
41382190 |
cacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgtatcaagacgttttcccggaaccatc |
41382289 |
T |
|
| Q |
101 |
tcatgcatctcaaccatttgccacaaggtgtacagtgtgatgacccatgaaagaacaagtatagccaatcctggacccctgagtagagtaaaacaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || ||||||| ||||||||| | ||||||| ||| ||||||||||||| |||||||||| |||||| |
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|
| T |
41382290 |
tcatgcatctcaaccatttgccacagggtgtagagagtgatgatccatgaaaggataagtataatcaaacctggacccctgaatagagtaaaagaaatat |
41382389 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
41382390 |
t |
41382390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 45123544 - 45123670
Alignment:
| Q |
211 |
aaggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
45123544 |
aaggaaaaagcttgttggtgcgacatggtagtgcacaaatagcaacgaattaatattggcctttggatatacttgagattgtaagctttgttgacattca |
45123643 |
T |
|
| Q |
311 |
tttatttgaaaaatataataacactag |
337 |
Q |
| |
|
|||||| ||||||| |||||||||||| |
|
|
| T |
45123644 |
tttattagaaaaatgtaataacactag |
45123670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 43853201 - 43853161
Alignment:
| Q |
83 |
cgttttcctggaaccatctcatgcatctcaaccatttgcca |
123 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
43853201 |
cgttttcctggaaccatttcatgcatttcaaccatttgcca |
43853161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 23523052 - 23523199
Alignment:
| Q |
213 |
ggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatt |
312 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
23523052 |
ggaaaaagcttgttggtgtgacatggtagtgcacgaatagcaacgaattaatattggcctttggatataattgagattgtaagctttgttgactttcatt |
23523151 |
T |
|
| Q |
313 |
tatttgaaaaatataataacactagcttcctttat-gtgtgccagtcg |
359 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
23523152 |
tattagaaaaatataataacactagctgcctttatcgtgtgctagtcg |
23523199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 31384886 - 31384737
Alignment:
| Q |
211 |
aaggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttca |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || | ||||||||| ||||||||| |||| | ||||||||||| |
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|
| T |
31384886 |
aaggaaaaagcttgttggtgcgacatgctagtggacgaaaagcaacgaattaatgttagcttttggatatgcttgagattgtaagttgcgttgactttca |
31384787 |
T |
|
| Q |
311 |
tttatttgaaaaatataataacactagcttccttta-tgtgtgccagtcg |
359 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
31384786 |
tttatttgaaaaatataacaacactagctgcctttaccgtgtgccagtcg |
31384737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 359
Target Start/End: Original strand, 26558385 - 26558535
Alignment:
| Q |
210 |
aaaggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttc |
309 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| | ||||||| |||||| | |||| ||||| ||||||||| ||| | ||||||||||| |
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|
| T |
26558385 |
aaaggaaaaagtttgttggtgcgacatgttagtgcacgaaaaccaacgaaataatatcagcctttagatatgcttgagattgtaaattgtgttgactttc |
26558484 |
T |
|
| Q |
310 |
atttatttgaaaaatataataacactagcttcctttat-gtgtgccagtcg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
26558485 |
atttatttgaaaaatataataacactagctacctgcatcgtgtgccagtcg |
26558535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 3315 - 3499
Alignment:
| Q |
2 |
acaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatct |
101 |
Q |
| |
|
|||||||||||||||| |||||| | | ||||||||||| ||||| || ||||| || | ||||| || |||||| ||||||||| |||||||| | |
|
|
| T |
3315 |
acaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtacctatcaaaacgttttccaggaaccattt |
3414 |
T |
|
| Q |
102 |
catgcatctcaaccatttgccacaaggtgtacagtgtgatgacccatgaaagaacaagtatagccaatcctggacccctgagtag |
186 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||| |||||| | | |||||||| ||| ||||||||||||||||| |
|
|
| T |
3415 |
catgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagtatagtcaaacctggacccctgagtag |
3499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 14198790 - 14198905
Alignment:
| Q |
35 |
aacttttcaccaaaagcatgttgccctaattcattatatgtatcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgtaca |
134 |
Q |
| |
|
||||||||||||||||||| ||| || | ||||| |||| |||| | |||||| || || ||||| ||||||||||||||||||||||| || ||||| | |
|
|
| T |
14198790 |
aacttttcaccaaaagcatattgacccagttcatgatatctatcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgccataacgtgtata |
14198889 |
T |
|
| Q |
135 |
gtgtgatgacccatga |
150 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
14198890 |
atgtgatgaaccatga |
14198905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 48961307 - 48961346
Alignment:
| Q |
299 |
tgttgactttcatttatttgaaaaatataataacactagc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961307 |
tgttgactttcatttatttgaaaaatataataacactagc |
48961346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 48960123 - 48960204
Alignment:
| Q |
213 |
ggaaaaagcttgttggtgcgacatggtagtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataag |
295 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| | | ||||| |||||| || ||||||||| |||||||| |||| |
|
|
| T |
48960123 |
ggaaaaagcttgttggtgcggcatgttagtgcacgaaaacctacgaa-aaatattagtatttggatatgtttgagattgtaag |
48960204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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