View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6275_low_4 (Length: 335)
Name: NF6275_low_4
Description: NF6275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6275_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 55956413 - 55956107
Alignment:
| Q |
19 |
gtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956413 |
gtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgatt |
55956314 |
T |
|
| Q |
119 |
caacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956313 |
caacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttc |
55956214 |
T |
|
| Q |
219 |
ttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggtaagt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956213 |
ttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggtaagt |
55956114 |
T |
|
| Q |
319 |
acctttg |
325 |
Q |
| |
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||||||| |
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| T |
55956113 |
acctttg |
55956107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 325
Target Start/End: Complemental strand, 55959859 - 55959551
Alignment:
| Q |
22 |
tcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgattcaa |
121 |
Q |
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||||| |||||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||| ||||| | |||||||| |||||| | |||||||||| |
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| T |
55959859 |
tcatcccctgatttagccaaagagatattgaagacacgtgatcttgcttttgttcaaaggccaaaactcattgctcctaatatattagcctatgattcaa |
55959760 |
T |
|
| Q |
122 |
cagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttc-----ttagtgctaaaagggttcattatttt |
216 |
Q |
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| | |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||| | |||| |
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| T |
55959759 |
ctggtattgtctttgctccatacggtgattattggagacaaatgaggaaaatatgtacatcagaacttcttatattagtgctaaaagggttcaatctttt |
55959660 |
T |
|
| Q |
217 |
tcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcactttcactaccacttaatgttactaaaacagctttttctttggtaa |
316 |
Q |
| |
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||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
55959659 |
tcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttcactttcactaccacttgatgttactaaaatagctttctctttggtaa |
55959560 |
T |
|
| Q |
317 |
gtacctttg |
325 |
Q |
| |
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||||||||| |
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| T |
55959559 |
gtacctttg |
55959551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 12426743 - 12426506
Alignment:
| Q |
19 |
gtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgatt |
118 |
Q |
| |
|
|||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||| ||||||| | |
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| T |
12426743 |
gtttcatcccctaatttgactaaagagataatgaagacacatgatctttcttttgttcagaggccacaattcctagctccaaatatattaacatatgaat |
12426644 |
T |
|
| Q |
119 |
caacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttc |
218 |
Q |
| |
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||| ||||||| | | |||| |||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || | |||||| |
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| T |
12426643 |
caaaagatattatctttgcttcatatggtgattattggagacagatgagaaaaatatgtacatcagaacttcttagtgctaaaagggtccaatctttttc |
12426544 |
T |
|
| Q |
219 |
ttccattagagaagaagaggtgcaaaagctcatacaat |
256 |
Q |
| |
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||||||||||||||| | |||| ||||| | ||||||| |
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| T |
12426543 |
ttccattagagaagatggggtggaaaagatgatacaat |
12426506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 12266077 - 12266314
Alignment:
| Q |
19 |
gtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctcctaaaatattatcatatgatt |
118 |
Q |
| |
|
|||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||| ||| |||||||| | |||| ||||| || ||| || | ||||| | |
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| T |
12266077 |
gtttcatcccctaatttgaccaaagaaataatgaggacacatgatctttctttcgttgagaggccacgattccttgctccgaatataataacctatgaat |
12266176 |
T |
|
| Q |
119 |
caacagatattgtttatg-ctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattattttt |
217 |
Q |
| |
|
||| ||||||| | ||| || |||| ||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| || | ||||| |
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| T |
12266177 |
caaaagatattctc-atgtcttcatatggtgattattggagacagatgagaaaaatatgtacatcagaacttcttagtgctaaaagggtccaatcttttt |
12266275 |
T |
|
| Q |
218 |
cttccattagagaagaagaggtgcaaaagctcatacaat |
256 |
Q |
| |
|
|||||||||||||||| | |||| ||||| | ||||||| |
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| T |
12266276 |
cttccattagagaagatggggtggaaaagatgatacaat |
12266314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 7140643 - 7140753
Alignment:
| Q |
123 |
agatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgctaaaagggttcattatttttcttcc |
222 |
Q |
| |
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||||||||| | | ||||||| ||||||||||||||||| ||||| ||||||||| | | || |||| ||||||||||||||||| | |||||||| | |
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| T |
7140643 |
agatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtcttagagattctaagtgctaaaagggttcaatctttttcttac |
7140742 |
T |
|
| Q |
223 |
attagagaaga |
233 |
Q |
| |
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||||||||||| |
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|
| T |
7140743 |
attagagaaga |
7140753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 7130269 - 7130335
Alignment:
| Q |
112 |
tatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgta |
178 |
Q |
| |
|
|||| ||||| |||||||| | | ||||||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
7130269 |
tatggttcaaaagatattgcattttctccatatggtgattattggagacaaatgagaaaaatatgta |
7130335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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