View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6275_low_5 (Length: 327)
Name: NF6275_low_5
Description: NF6275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6275_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2408756 - 2409083
Alignment:
| Q |
1 |
tataacaattatttactcagattagtcatcataactaattggccacagtatactacagtaggaacacttcaatgcactctatttaacaagaaattaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2408756 |
tataacaattatttactcagattagtcatcataactaattggccacagtataatacagtaggaacacttcaatgcactctatttaacaagaaattaacct |
2408855 |
T |
|
| Q |
101 |
aattatttcaaccatattcaaaattcaagtaaataactctaaacaacgatgaagattaagaataacttagaaaacgataataagttgcatttcaatgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2408856 |
aattatttcaaccatattcaaaattcaagtaaataactctaaacaacgatgaagattaagaataacttagaaaacgataataagttgcatttcaatgaaa |
2408955 |
T |
|
| Q |
201 |
acaagtaatatatctaataatcatgaacaaatctttacctcaacaatgataacaagatgcgtagaactctccttgatgaagaatcacgatttgagtaact |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2408956 |
acaagtaatatatctaataattatgaacaaatctttacctcaacattgataacaagatgtgtagaactctccttgatgaagaatcacgatttgagcaact |
2409055 |
T |
|
| Q |
301 |
ttg-gttgggaatatagggctaccacaa |
327 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
2409056 |
ttgatttgggaatatagggttaccacaa |
2409083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University