View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6275_low_6 (Length: 268)
Name: NF6275_low_6
Description: NF6275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6275_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 56005237 - 56005475
Alignment:
| Q |
1 |
gactattgagtttgatttagtttccatctgttctggtcagtttgattcccactgttcttatataatattgatatgcatttgtttttattgatttacttag |
100 |
Q |
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| T |
56005237 |
gactattgagtttgatttagtttccatctg-----gtcagtttgattcccactgttcttatataatattgatatgcatttgttttcattgatttacttag |
56005331 |
T |
|
| Q |
101 |
cctatagggtgaagaagcgtcacatgtgacaaagttcgaaaattgtttaaaacttctgactacaacgtcatcatttttaagaaaattcgaggtccttata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56005332 |
cctatagggtgaagaagcgtcacatgtgacaaagttcaaaaattgtttaaaacttctaactacaacgtcatcatttttaagaaaattcgaggtccttata |
56005431 |
T |
|
| Q |
201 |
tctgagagagagagtaatttgatcattgttagtgttgattcaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56005432 |
tctgagagagagagtaatttgatcattgttagtgttgattcaac |
56005475 |
T |
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