View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_high_17 (Length: 263)
Name: NF6276_high_17
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 44257493 - 44257262
Alignment:
| Q |
15 |
gagatgaacacatgacataattaataagaagctaaacccattttttattcatataacgtgaattcttcatcaatataaagtaacataacaacagtcaaca |
114 |
Q |
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| T |
44257493 |
gagaagaacacatgacataattaataagaagctaaacccattttttattcatataacataaattcttcatcaatataaagtaacataacaacagtcaaca |
44257394 |
T |
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| Q |
115 |
ataaatttgatgagtgtttccagccatgtaaacatacattttttccttcaccattctactcttaattattgttaacgtttctctcaaaaaagtaatgctc |
214 |
Q |
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| T |
44257393 |
ataaatttgatgagtgtttccagccatgtaaacatccattttttccttcaccattctactcttaattattgttaacgtttctctcaaaaaagtaatgctc |
44257294 |
T |
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| Q |
215 |
agatcttgaatagaggcattgaatctgattag |
246 |
Q |
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| T |
44257293 |
agatcttgaatagaggcattgaatctgattag |
44257262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 6306688 - 6306725
Alignment:
| Q |
15 |
gagatgaacacatgacataattaataagaagctaaacc |
52 |
Q |
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| T |
6306688 |
gagaagaacacatgacataattaataagaagctaaacc |
6306725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 20208936 - 20208904
Alignment:
| Q |
20 |
gaacacatgacataattaataagaagctaaacc |
52 |
Q |
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| T |
20208936 |
gaacacatgatataattaataagaagctaaacc |
20208904 |
T |
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