View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_high_2 (Length: 528)
Name: NF6276_high_2
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Complemental strand, 42133827 - 42133346
Alignment:
| Q |
21 |
gaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacgaaaaggactaggattctaggaaatttaggaggaagggaaggac |
120 |
Q |
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| T |
42133827 |
gaagctacaacaagtaccacctattgaggaaaaaagaagagatcttggatccaaacgaaaaggactaggattctaggaaatttaggaggaagggaaggac |
42133728 |
T |
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| Q |
121 |
cactcttaattaattgaagtggatgggaaggatatataataatgaaatcattcataaaaggctaagcaattatagccaaagcaaacatagctttggtgct |
220 |
Q |
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| T |
42133727 |
cactcttaattaattgaagtggatgggaaggata----ataatgaaatcattcataaaaggctaagcaattatagccaaagcaaacatagctttggtgct |
42133632 |
T |
|
| Q |
221 |
tctcattgcgggcctaacaacatagcttgataagtctttttctactcaactcttttctggctttgaggataagctacctagctagcaacaattaggatca |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133631 |
tctcattgcgggcctaaca---tagcttgataagtctttttctactcaactcttttctggctttgaggataagctacctagctagcaacaattaggatca |
42133535 |
T |
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| Q |
321 |
caaacacatgcaaaaggccaaaatatgtcacgtaccatagttatgtgttaacttaaatgcgtaatgataagtggtacaaaaggaaccatcttatttagcc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133534 |
caaacacatgcaaaaggccaaaatatgtcacgtaccatagttatgtgttaacttaaatgcgtaatgataagtggtacaaaaggaaccatcttatttagcc |
42133435 |
T |
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| Q |
421 |
tcctttattttttgaataagctctaatttaacttacctcacctataaatcttgcattcttactaatctagaaattattatcataaacag |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133434 |
tcctttattttttgaataagctctaatttaacttacctcacctataaatcttgcattcttactaatctagaaattattatcataaacag |
42133346 |
T |
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