View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_high_3 (Length: 528)
Name: NF6276_high_3
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 41745193 - 41745716
Alignment:
| Q |
18 |
acacctaaccttgtcttcttcactgtctgcagatgttgtattgtagcctcttcctcttattttcttacggtgacattccaaaa----------------g |
101 |
Q |
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| T |
41745193 |
acacctaaccttgtcttcttcgctgtctgcagatgttgtattgtagcctcttcctcttattttcttacggtgacattccaaaatttacaccgtccaaaag |
41745292 |
T |
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| Q |
102 |
atcattaacacattataatatacataataattcatatttacaccccttaataattctccatagaaatctaattattacaatgttgtagtccgtatatata |
201 |
Q |
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| T |
41745293 |
atcattaacacattataatatacataataattcatatttacaccccttaataattctccatagaaatctaattattacaatgttctagtcc----atata |
41745388 |
T |
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| Q |
202 |
actt-ggggaaaaaatcaacattagtggtttagttgacttagacatacaagcaaaacaccttagcaacagaaagaagcagtgaagaatgaggatgacaaa |
300 |
Q |
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| T |
41745389 |
actttggggaaaaaatcaacattagtggtttagttgacttagacatataagcaaaacaccttagcaacagaaagaagcagtgaagaatgaggatgacaaa |
41745488 |
T |
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| Q |
301 |
aaatatgtgcaacagtgaaggacagttagacgttgcacaattcagcaaaccaatgccatggattggaatctacatagcaacagcatcacttttatgtctc |
400 |
Q |
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| T |
41745489 |
aaatatgtgcaacagtgaaggacagttagacgatgcacaattcagcaaaccaatgccatggattggaatctacatagcaacagcatcacttttatgtctc |
41745588 |
T |
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| Q |
401 |
atttctatgtctgcagatctcattaaaggcatcaaaacccgcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataattg |
500 |
Q |
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| T |
41745589 |
atttctatgtctgcagacctcattaaaggcatcaaaacccgcaaactatggttcccttgcaaatacttttgtctcaacgcaacttccttaaccataatcg |
41745688 |
T |
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| Q |
501 |
ctgtttctttaaaactctcggttgatct |
528 |
Q |
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| T |
41745689 |
ctgtttctttaaaactctcggttgatct |
41745716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 273 - 528
Target Start/End: Complemental strand, 41740299 - 41740044
Alignment:
| Q |
273 |
agaagcagtgaagaatgaggatgacaaaaaatatgtgcaacagtgaaggacagttagacgttgcacaattcagcaaaccaatgccatggattggaatcta |
372 |
Q |
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| T |
41740299 |
agaagcattgaagaataaagatggcaaaaaacatgtgcaacagtgaaggacacttagatgacacaaatttcagcaagccaatgccatggataggagtcta |
41740200 |
T |
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| Q |
373 |
catagcaacagcatcacttttatgtctcatttctatgtctgcagatctcattaaaggcatcaaaacccgcaaactatggttcccttgcaaatacttttgt |
472 |
Q |
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| T |
41740199 |
catagcaacagcatcacttttatctcttatttcaatgtctgcagatctcattaaaggcatcaaaacccgaaaactatggttcccttgcaaatacttttgt |
41740100 |
T |
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| Q |
473 |
ctcaacgcaacttccttaaccataattgctgtttctttaaaactctcggttgatct |
528 |
Q |
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| T |
41740099 |
ctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatct |
41740044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 19613220 - 19613285
Alignment:
| Q |
18 |
acacctaaccttgtcttcttcactgtctgcagatgttgtattgtagcctcttcctcttattttcttacggt |
88 |
Q |
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| T |
19613220 |
acacctaaccttgtcttcttcactgtctgcagatg-----ttctagcctcctcctcttattttcttgcggt |
19613285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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