View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_high_6 (Length: 378)
Name: NF6276_high_6
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 55162440 - 55162074
Alignment:
| Q |
1 |
gctctgtggcataccatttaagctcgttttcaaacactgcagcattgaaccgtttcaaaaaccaattctgatatggtatgttgccaagaatggtctttga |
100 |
Q |
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| T |
55162440 |
gctctgtggcataccatttaagctcgttttcaaacactgcagcattgaaccgtttcaaaaaccaattctgatatggtatgttgccaagaatggtctttgc |
55162341 |
T |
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| Q |
101 |
tatcgcagagccaataggaaagtcttttgatatttgctctacaaacacagaagctccttgtaatttctttccattagggtctgatacatgaacggtgacg |
200 |
Q |
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| T |
55162340 |
tatcgcagagccaataggaaagtcttttgatatttgctctacaaacacagaagctccttgtaatttccttccattagggtctgatacatgaacggtgacg |
55162241 |
T |
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| Q |
201 |
gcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacacc-----aaat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
55162240 |
gcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatat-----acctatgagacaccaaattaaat |
55162146 |
T |
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| Q |
296 |
tgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162145 |
tgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
55162074 |
T |
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