View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6276_high_9 (Length: 364)
Name: NF6276_high_9
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 40005339 - 40005015
Alignment:
| Q |
30 |
agtaataataatattgttgtgagtgagggttaattatgaatgaatgttgagagttatatgatatgaatgagggtgctaatgctatattgaagggtgaggg |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40005339 |
agtaataataatattattgtgagtgagggttaattatgaatgaatgttgagagttatatgatatgaatgagggtgctaatgctatattgaagggtgaggg |
40005240 |
T |
|
| Q |
130 |
aagaagaggaagatgttaaattattgttgaggtctagaaatgtcaatgccaacgaagctggtcccactggttttggactcacaatatacacaatattatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40005239 |
aagaagaggaagatgttaaattattgttgaggtctagaaatgtcaatgccaacgaagctggtcccactggttttggactcacaatatacacaat---att |
40005143 |
T |
|
| Q |
230 |
acaaagaagaaacacccaagnnnnnnnnggattaattcaagttatgtgtttgtgtgatatcatatatttatgggctataactttcacgctccacaac-aa |
328 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40005142 |
acaaagaagaaacacccaagttttttttggattaattcaagttatgtgtttgtgtgatatcatatatttatgggctttaactttcacgctccacaacaaa |
40005043 |
T |
|
| Q |
329 |
gagcgtcttcacttttttcacctttgct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40005042 |
gagcgtcttcacttttttcacctttgct |
40005015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University