View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6276_low_1 (Length: 858)

Name: NF6276_low_1
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6276_low_1
NF6276_low_1
[»] chr1 (16 HSPs)
chr1 (400-828)||(15642534-15642962)
chr1 (126-397)||(15642221-15642499)
chr1 (3-70)||(15642098-15642165)
chr1 (606-708)||(33515268-33515370)
chr1 (400-483)||(44913188-44913271)
chr1 (410-491)||(36806700-36806781)
chr1 (400-484)||(2044476-2044560)
chr1 (407-480)||(10750683-10750756)
chr1 (426-483)||(18428121-18428178)
chr1 (400-489)||(46864170-46864259)
chr1 (400-492)||(16756161-16756252)
chr1 (400-492)||(12035629-12035721)
chr1 (417-492)||(49071673-49071747)
chr1 (400-474)||(42297430-42297504)
chr1 (403-483)||(32534165-32534244)
chr1 (400-446)||(33721019-33721065)
[»] chr8 (11 HSPs)
chr8 (400-492)||(4124995-4125086)
chr8 (400-476)||(7839239-7839315)
chr8 (400-492)||(2744012-2744103)
chr8 (400-463)||(19715724-19715788)
chr8 (410-492)||(13468715-13468797)
chr8 (400-463)||(12958084-12958147)
chr8 (400-463)||(30936083-30936146)
chr8 (400-454)||(15683008-15683062)
chr8 (402-460)||(36994502-36994560)
chr8 (403-481)||(40320178-40320256)
chr8 (400-494)||(30055969-30056063)
[»] chr4 (15 HSPs)
chr4 (400-491)||(9012349-9012440)
chr4 (400-497)||(31307031-31307128)
chr4 (400-476)||(14854684-14854760)
chr4 (400-483)||(51626285-51626368)
chr4 (400-481)||(38766168-38766249)
chr4 (400-492)||(33529336-33529428)
chr4 (400-492)||(46016228-46016319)
chr4 (400-460)||(45994601-45994661)
chr4 (400-474)||(35972422-35972496)
chr4 (410-476)||(38844154-38844220)
chr4 (411-463)||(35334097-35334149)
chr4 (416-463)||(13948591-13948638)
chr4 (403-474)||(15133457-15133528)
chr4 (400-462)||(22017543-22017605)
chr4 (399-460)||(13686680-13686741)
[»] scaffold0182 (1 HSPs)
scaffold0182 (400-493)||(26410-26502)
[»] chr5 (9 HSPs)
chr5 (400-492)||(10592006-10592097)
chr5 (400-492)||(5123469-5123560)
chr5 (400-483)||(31113413-31113496)
chr5 (400-491)||(25983744-25983835)
chr5 (400-475)||(29553618-29553693)
chr5 (400-457)||(2798320-2798377)
chr5 (400-457)||(2804487-2804544)
chr5 (410-497)||(22187963-22188050)
chr5 (400-458)||(36212975-36213033)
[»] chr3 (13 HSPs)
chr3 (403-492)||(38331210-38331299)
chr3 (400-492)||(48204281-48204373)
chr3 (410-492)||(8757433-8757514)
chr3 (402-492)||(25224780-25224870)
chr3 (400-500)||(43621273-43621374)
chr3 (400-492)||(40294691-40294782)
chr3 (400-483)||(27763800-27763883)
chr3 (400-481)||(55123176-55123257)
chr3 (400-472)||(30995955-30996027)
chr3 (400-475)||(20861327-20861402)
chr3 (409-446)||(15283159-15283196)
chr3 (400-455)||(21223461-21223516)
chr3 (409-472)||(44941255-44941317)
[»] chr2 (14 HSPs)
chr2 (400-481)||(25423823-25423904)
chr2 (400-492)||(5394475-5394567)
chr2 (400-481)||(17981577-17981657)
chr2 (400-501)||(37179962-37180063)
chr2 (410-481)||(14551563-14551634)
chr2 (403-469)||(34386565-34386633)
chr2 (400-463)||(7020359-7020422)
chr2 (408-494)||(37092164-37092249)
chr2 (401-462)||(38743818-38743879)
chr2 (403-462)||(14121882-14121941)
chr2 (400-483)||(31579208-31579291)
chr2 (400-483)||(42745095-42745178)
chr2 (402-460)||(26296440-26296498)
chr2 (404-484)||(38372972-38373050)
[»] chr7 (13 HSPs)
chr7 (400-492)||(29059884-29059975)
chr7 (400-492)||(31492182-31492273)
chr7 (404-483)||(11486723-11486802)
chr7 (402-483)||(20207578-20207659)
chr7 (400-481)||(35707925-35708006)
chr7 (400-462)||(29428792-29428854)
chr7 (403-476)||(24172291-24172364)
chr7 (400-466)||(19477246-19477311)
chr7 (400-483)||(46373752-46373837)
chr7 (410-481)||(37339714-37339785)
chr7 (400-481)||(42741790-42741870)
chr7 (429-473)||(36821069-36821113)
chr7 (400-446)||(13254117-13254163)
[»] chr6 (6 HSPs)
chr6 (400-492)||(12836867-12836959)
chr6 (400-497)||(9536846-9536943)
chr6 (401-474)||(31107481-31107554)
chr6 (400-481)||(31412201-31412282)
chr6 (400-466)||(1534331-1534397)
chr6 (427-492)||(25084140-25084205)
[»] scaffold0009 (1 HSPs)
scaffold0009 (400-475)||(27212-27287)
[»] scaffold0013 (1 HSPs)
scaffold0013 (417-483)||(29131-29197)


Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 400 - 828
Target Start/End: Original strand, 15642534 - 15642962
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataaaa 499  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  15642534 agggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaagataaaa 15642633  T
Q  500 agtagaagagcgatagagataaatatatacgatgttacatgcatatatgtattttaatgttcaaataataggacaaaaataaatatatgaagttaaataa 599  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15642634 agtagaagagcgatagagataaatatataagatgttacatgcatatatgtattttaatgttcaaataatacgacaaaaataaatatatgaagttaaataa 15642733  T
Q  600 ataatgacctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcacttctaatcatcttttcagcatattgaatttttctcttgttaat 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642734 ataatgacctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcacttctaatcatcttttcagcatattgaatttttctcttgttaat 15642833  T
Q  700 gaattctccatacccttcttttataggactattcaccaaatcctcccacaaaattgaagtaacagcagttatagcctttgttggtgtagttgctggaata 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642834 gaattctccatacccttcttttataggactattcaccaaatcctcccacaaaattgaagtaacagcagttatagcctttgttggtgtagttgctggaata 15642933  T
Q  800 tcaattctcattgccattttaggttttcc 828  Q
    |||||||||||||||||||||||||||||    
T  15642934 tcaattctcattgccattttaggttttcc 15642962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 126 - 397
Target Start/End: Original strand, 15642221 - 15642499
Alignment:
Q  126 gagtacagttttcaaagtatagataatatcaattctttcccaaagtcatccaattatatat------acaaatgagtagttgagaaatatttctaattta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||| |||| ||||||||| ||    
T  15642221 gagtacagttttcaaagtatagataatatcaattctttcccaaagtcatccaattatatattatcatacaaatgagtagttgtgaaacatttctaatata 15642320  T
Q  220 gaagag--ttcaaatttgaaaggattaaactagatgagaaatatccctgatttggattcattcacactaatattttgtttttgtagcatactcatgattg 317  Q
    ||||||  |||||||| |||| |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642321 gaagagagttcaaattagaaaagattaaaccaaatgagaaata-ccctgatttggattcattcacactaatattttgtttttgtagcatactcatgattg 15642419  T
Q  318 gatcaattgagttcacatttgctttagatccctnnnnnnngaaacgtcttgacccactaatacccagctaatattgcaca 397  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  15642420 gatcaattgagttcacatttgctttagatccctaaaaatagaaacgtcttgacccactaatacccagctaatattgcaca 15642499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 15642098 - 15642165
Alignment:
Q  3 gatgtcgaagaatatgaattcaaaatatttgtaactcgaattgatcgattttatcacaaaacacagtg 70  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15642098 gatgttgaacaatatgaattcaaaatatttgtaactcgaattgatcgattttatcacaaaacacagtg 15642165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 606 - 708
Target Start/End: Complemental strand, 33515370 - 33515268
Alignment:
Q  606 acctgtaagttttgagaaggccaaggcctttatagagttcaacaaaagcacttctaatcatcttttcagcatattgaatttttctcttgttaatgaattc 705  Q
    |||| ||||||||||| | |||||||||| ||||||| || |||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||    
T  33515370 acctataagttttgagcaagccaaggcctctatagagctccacaaaagcacttctaatcattttttcagcacattgaatttttttcttgtgaatgaaatc 33515271  T
Q  706 tcc 708  Q
    |||    
T  33515270 tcc 33515268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 44913188 - 44913271
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||  |||||||    
T  44913188 agggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttaca 44913271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 410 - 491
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaa 491  Q
    |||||||||||||| | |||||||||||||| ||||| ||||||||||||| ||  ||||||||||| |||||| |||||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 2044476 - 2044560
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacat 484  Q
    |||||||| || ||||| |||||| | ||||||||||| |||||||| ||||||||||| |||| |||| |||||||||||||||    
T  2044476 agggagagattaccgcctatttgggttccacaatgctcaagagattagtctctgcagtttcgcgtagagaatacccgatttacat 2044560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 407 - 480
Target Start/End: Original strand, 10750683 - 10750756
Alignment:
Q  407 gcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattt 480  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||| | |||||||||| |||||||||| |||||    
T  10750683 gcttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 18428178 - 18428121
Alignment:
Q  426 cccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttaca 18428121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 489
Target Start/End: Original strand, 46864170 - 46864259
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaa 489  Q
    ||||||| ||||||| |||||||| |  ||||||| ||||| ||||| |||||||||||||||| | |||||||| |||||||| |||||    
T  46864170 agggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacccaaa 46864259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 16756161 - 16756252
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| || ||  ||||||| |||||||||||||||| ||||| |||| |||||||||||  |||||||| ||||||||| ||||||||    
T  16756161 agggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttaca-ccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 12035629 - 12035721
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||  |||||||||||||| |||||||||||||||| ||||| |||| ||| |||| ||  || ||||| |||||||||  |||||||    
T  12035629 agggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgatttacactcaaaaaa 12035721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 417 - 492
Target Start/End: Original strand, 49071673 - 49071747
Alignment:
Q  417 catttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||| |  || |||| |||||||||| ||||||||    
T  49071673 catttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttaca-ccaaaaaa 49071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 42297504 - 42297430
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacc 474  Q
    ||||||||  ||||| |||||||| || ||||||||||||| ||||| |||| |||||||||||  |||||||||    
T  42297504 agggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 42297430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 403 - 483
Target Start/End: Original strand, 32534165 - 32534244
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    |||||||| ||||||||| || || ||||||||||||||| ||| |||| ||| ||||||| |||||||||| | ||||||    
T  32534165 gagagcttaccgcccattagg-tctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 33721019 - 33721065
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 446  Q
    |||||||| |||||| ||||||||||||||||| | |||||||||||    
T  33721019 agggagagtttgccgtccatttggatcccacaaggttcgagagatta 33721065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 4125086 - 4124995
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  4125086 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttaca-ccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 476
Target Start/End: Complemental strand, 7839315 - 7839239
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccg 476  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| |||||||||||  |||||||||||    
T  7839315 agggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccg 7839239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 2744012 - 2744103
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| || || |||||||| |||||||||||||||| ||||| |||| |||||||||||  ||||||||||| |||||| ||||||||    
T  2744012 agggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttaca-ccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 19715788 - 19715724
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcga-gagattattctctgcagttgcgcg 463  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||| |||| |||||||||||    
T  19715788 agggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcg 19715724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 492
Target Start/End: Complemental strand, 13468797 - 13468715
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    |||||||||||||  |||||||||||||||  ||||| |||| ||||||||||   ||||||||||| |||||| ||||||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaaa 13468715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 12958147 - 12958084
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcg 463  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||||| |||| ||||| |||||    
T  12958147 agggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcg 12958084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 30936083 - 30936146
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcg 463  Q
    ||||||||| |||||||||||||| ||| |||||| ||||| ||||| |||| |||||||||||    
T  30936083 agggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcg 30936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 15683008 - 15683062
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgc 454  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||| |||||||    
T  15683008 agggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctctgc 15683062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 460
Target Start/End: Complemental strand, 36994560 - 36994502
Alignment:
Q  402 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgc 460  Q
    |||||| |||| |||||||||| |||||||| ||||||| ||||| |||||||||||||    
T  36994560 ggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 403 - 481
Target Start/End: Original strand, 40320178 - 40320256
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||| |||||| | ||||||||||||| ||||||||||||||| |||||| |||||  ||  |||||||||| |||||    
T  40320178 gagagtttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacccaattta 40320256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 494
Target Start/End: Complemental strand, 30056063 - 30055969
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaaga 494  Q
    ||||||||| ||||| |||||||| | |||||||||||||| ||||| |||||  ||||||| |  | |||||  ||||| ||| ||||||||||    
T  30056063 agggagagcctgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggatattcgattgacacccaaaaaaga 30055969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 9e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 400 - 491
Target Start/End: Original strand, 9012349 - 9012440
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaa 491  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||||| |||| |||||||||||  |||||||||||||||| | |||||||    
T  9012349 agggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 497
Target Start/End: Complemental strand, 31307128 - 31307031
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataa 497  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| |||||||||||  ||||||||||| |||||| | |||||| ||||    
T  31307128 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaaaaataa 31307031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 476
Target Start/End: Original strand, 14854684 - 14854760
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccg 476  Q
    |||||||||||||||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||  |||||||||||    
T  14854684 agggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacccg 14854760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 51626368 - 51626285
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||  ||||| |||||||| ||||||| |||||||||||||| |||| |||||||||||  ||||||||||||||||||    
T  51626368 agggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 38766168 - 38766249
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||||  |||||||||||||| || ||||||||||||| ||||| |||| |||||||||||  ||||||||||||||||    
T  38766168 agggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgattta 38766249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 33529336 - 33529428
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    |||||||||||||||||||||||| ||||||||| || ||| ||||| |||| ||||||||||   ||||||||  |||||||| ||||||||    
T  33529336 agggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaaa 33529428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 46016228 - 46016319
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||||| |||||||||||||||   |||| |||| | |||||||||  |||||||||||||||||| ||||||||    
T  46016228 agggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttaca-ccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 45994601 - 45994661
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgc 460  Q
    ||||||||| || ||||||||||| || ||||||||||||||||||| |||| ||||||||    
T  45994601 agggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgc 45994661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 35972422 - 35972496
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacc 474  Q
    |||||||| ||||||||||||||| |||||| ||| ||||| ||||| |||| ||||||||| |  |||||||||    
T  35972422 agggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacc 35972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 476
Target Start/End: Complemental strand, 38844220 - 38844154
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccg 476  Q
    |||||||||||||   ||||||||||||||||||||| ||||| | ||| |||| ||||||||||||    
T  38844220 tgccgcccatttgacccccacaatgctcgagagattagtctctactgttacgcgcagaggatacccg 38844154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 411 - 463
Target Start/End: Complemental strand, 35334149 - 35334097
Alignment:
Q  411 gccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcg 463  Q
    ||||||||||||| ||||||||| |||||| ||||| |||| |||||||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcg 35334097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 463
Target Start/End: Complemental strand, 13948638 - 13948591
Alignment:
Q  416 ccatttggatcccacaatgctcgagagattattctctgcagttgcgcg 463  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  13948638 ccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcg 13948591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 15133457 - 15133528
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacc 474  Q
    ||||||||| || || ||||| |||||||||| | ||||||||| |||| |||||||||||  |||||||||    
T  15133457 gagagcttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 22017543 - 22017605
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgc 462  Q
    ||||| ||||||||||| ||||| ||| ||||||| ||||| ||||| ||||| |||||||||    
T  22017543 agggaaagcttgccgcctatttgaatcacacaatgatcgagcgattaatctctacagttgcgc 22017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 460
Target Start/End: Original strand, 13686680 - 13686741
Alignment:
Q  399 aagggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgc 460  Q
    ||||||||| |||||| |||||||| || ||||| ||||||||||||| ||||  |||||||    
T  13686680 aagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 493
Target Start/End: Original strand, 26410 - 26502
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaag 493  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||||||||  ||||||||||| |||||| |||||||||    
T  26410 agggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttaca-ccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 10592006 - 10592097
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||  |||||||||||||  |||||||||||||||| ||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  10592006 agggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttaca-ccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 5123560 - 5123469
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||| |||| |||||||||||  ||||||||||  |||||| ||||||||    
T  5123560 agggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttaca-ccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 31113413 - 31113496
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||| | |||||||||||||||||||||| |||||| ||||| |||| |||||||||||   |||||||||||||||||    
T  31113413 agggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttaca 31113496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 400 - 491
Target Start/End: Original strand, 25983744 - 25983835
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaa 491  Q
    |||||||||||||||||||||||  ||||| |||| ||||| ||||| |||| |||||||| |   ||||||||||| |||||| |||||||    
T  25983744 agggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 29553618 - 29553693
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggataccc 475  Q
    |||||||| ||| || |||||||| ||||| ||||||| |||||||| |||||||||||| |||  ||||||||||    
T  29553618 agggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggataccc 29553693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 2798377 - 2798320
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagt 457  Q
    ||||||||||| |||||||||||| | | ||||||||| |||||||| ||||||||||    
T  2798377 agggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcagt 2798320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 2804544 - 2804487
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagt 457  Q
    ||||||||||| |||||||||||| | | ||||||||| |||||||| ||||||||||    
T  2804544 agggagagcttaccgcccatttggtttctacaatgctctagagattaatctctgcagt 2804487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 497
Target Start/End: Complemental strand, 22188050 - 22187963
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataa 497  Q
    ||||||| |||||| ||||||||| || ||| ||||| |||| |||||||||||  |||||||||||  ||||| | |||||| ||||    
T  22188050 tgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaaaaataa 22187963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 458
Target Start/End: Original strand, 36212975 - 36213033
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagtt 458  Q
    |||||||| ||||||||||||| | |||||||||||||||| ||||  |||| ||||||    
T  36212975 agggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 38331210 - 38331299
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||||||||||||||| |||||||||| | ||| ||||| |||| |||||||| ||  |||||||||||||||||| ||||||||    
T  38331210 gagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 48204373 - 48204281
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    |||||||||||| || |||||||| | ||||||||||| || ||||| | || |||||||||||  |||||||||||||||||| ||||||||    
T  48204373 agggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaaa 48204281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 410 - 492
Target Start/End: Original strand, 8757433 - 8757514
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||| |||||| |||||||||||||||| ||||| |||| |||||||||||  ||||||||||| |||||| ||||||||    
T  8757433 tgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttaca-ccaaaaaa 8757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 402 - 492
Target Start/End: Original strand, 25224780 - 25224870
Alignment:
Q  402 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||| |||||||||||||| | ||||||||||||| || ||||| |||| |||||||| ||  ||||||||||| |||||| ||||||||    
T  25224780 ggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaaa 25224870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 500
Target Start/End: Complemental strand, 43621374 - 43621273
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaa-tgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataaa 498  Q
    |||||||||||||| |||||||   || ||||| |||||||| ||||| |||||| ||||||||| ||||||||||||||| ||| | |||||| |||||    
T  43621374 agggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaaatataaa 43621275  T
Q  499 aa 500  Q
    ||    
T  43621274 aa 43621273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 40294691 - 40294782
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||| |||||||||| |||||| |||||||||| |||||  ||||| |||| ||||||||||  | ||||||||||||||||| ||||||||    
T  40294691 agggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttaca-ccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 27763800 - 27763883
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||  ||||| |||||||  |||||||||||||||| ||||| |||| ||||||||||| |||||||| ||| ||||||    
T  27763800 agggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttaca 27763883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 55123176 - 55123257
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    |||||||||||||  ||||||||| || ||||||||||||| ||||| |||  |||||||||||  ||||||||| ||||||    
T  55123176 agggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgattta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 472
Target Start/End: Complemental strand, 30996027 - 30995955
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggata 472  Q
    ||||||||  |||||||||| ||| |||||||||||||||| ||||| |||| |||||||||||  |||||||    
T  30996027 agggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 30995955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 20861327 - 20861402
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggataccc 475  Q
    ||||||||| |||||||||||||| | ||| |||||||||| ||||| |||| ||||||| |||  ||||||||||    
T  20861327 agggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggataccc 20861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 446
Target Start/End: Original strand, 15283159 - 15283196
Alignment:
Q  409 ttgccgcccatttggatcccacaatgctcgagagatta 446  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagatta 15283196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 21223516 - 21223461
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgca 455  Q
    |||||||||||| |||| |||| ||||||||||||||| ||| |||| ||||||||    
T  21223516 agggagagcttgtcgcctatttagatcccacaatgctcaagaaattagtctctgca 21223461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 472
Target Start/End: Complemental strand, 44941317 - 44941255
Alignment:
Q  409 ttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggata 472  Q
    |||||||||||||||||||||  ||||||||| ||||| |||| |||||||||||  |||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgag-gattagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 25423823 - 25423904
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||| | |||||||||||||| |||||||||||||||| ||||| |||| |||||||||||  ||||||||||||||||    
T  25423823 agggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattta 25423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 5394475 - 5394567
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||||| |||||||||||||| | ||||| |||| |||||||| ||  |||||||| ||||||||| ||||||||    
T  5394475 agggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaaa 5394567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 17981577 - 17981657
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||| |||| |||||||||||  ||||||||||| ||||    
T  17981577 agggagagcttgccgca-atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 501
Target Start/End: Complemental strand, 37180063 - 37179962
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataaaa 499  Q
    ||||||||  |||||||||||||  ||||||||| |||||| ||||| |||  ||| |||||||  |||||||||||||||||| | |||||| ||||||    
T  37180063 agggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaaaaataaaa 37179964  T
Q  500 ag 501  Q
    ||    
T  37179963 ag 37179962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 410 - 481
Target Start/End: Original strand, 14551563 - 14551634
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||| |||||| ||| |||||||||||| ||||| |||| ||||||||||| ||||||||| |||||||    
T  14551563 tgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgattta 14551634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 34386565 - 34386633
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagtt--gcgcggagagg 469  Q
    |||||||||||| | ||||||||| || |||||||||||||||| |||||||||||  |||||||||||    
T  34386565 gagagcttgccgtctatttggatctcataatgctcgagagattaatctctgcagttacgcgcggagagg 34386633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 7020422 - 7020359
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcg 463  Q
    ||||||| |||||||||||||||| ||| |||||||||||| ||||| ||||  ||||||||||    
T  7020422 agggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcg 7020359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 494
Target Start/End: Complemental strand, 37092249 - 37092164
Alignment:
Q  408 cttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaaga 494  Q
    ||||||| |||||||| ||||||| |||||||| ||||| |||| ||||||| ||   ||||||||||| |||||| ||||||||||    
T  37092249 cttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttaca-ccaaaaaaga 37092164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 462
Target Start/End: Original strand, 38743818 - 38743879
Alignment:
Q  401 gggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgc 462  Q
    ||||||||||||||| |||||||||| |||||||||  || ||||| |||| ||||||||||    
T  38743818 gggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 14121941 - 14121882
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgc 462  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| ||| || ||||||||    
T  14121941 gagaacttgccgcccatttgagtcccacaatgctcgagggattagtctatgaagttgcgc 14121882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 31579291 - 31579208
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||  ||||||||||||   ||||||||||||||||  |||| | || |||||||||||  ||||||||||| ||||||    
T  31579291 agggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 483
Target Start/End: Complemental strand, 42745178 - 42745095
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||||  ||| ||| |||||| | |||||||| ||||| ||||| |||| |||||||||||  ||||||||||| ||||||    
T  42745178 agggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 402 - 460
Target Start/End: Original strand, 26296440 - 26296498
Alignment:
Q  402 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgc 460  Q
    |||||| |||||||||| ||| ||||||||| ||||||||||||| ||||  |||||||    
T  26296440 ggagagtttgccgcccaattgaatcccacaaggctcgagagattagtctccacagttgc 26296498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 38373050 - 38372972
Alignment:
Q  404 agagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacat 484  Q
    ||||||||||||||||  || ||||||||||||| ||  |||| ||| | ||||||||||  ||||||||||||| |||||    
T  38373050 agagcttgccgcccat--gggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacccgatatacat 38372972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 29059884 - 29059975
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||||| |||||||||||| ||| ||||| |||| |||||||||||  ||||||||||| |||||| ||||||||    
T  29059884 agggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttaca-ccaaaaaa 29059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 31492182 - 31492273
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||| |||| |||||||||||  ||||||||||| |||||| ||||||||    
T  31492182 agggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttaca-ccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 11486802 - 11486723
Alignment:
Q  404 agagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    |||||||||||||||||||| | ||||||||||| |||||||| ||||| ||||||||||  ||||||||||| ||||||    
T  11486802 agagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttaca 11486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 20207578 - 20207659
Alignment:
Q  402 ggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||||||||  ||||||||| || ||||||    
T  20207578 ggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttaca 20207659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 35707925 - 35708006
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||| |||||| ||||||| ||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||| ||||    
T  35707925 agggagaacttgcctcccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 29428854 - 29428792
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgc 462  Q
    |||||||| |||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  29428854 agggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 476
Target Start/End: Original strand, 24172291 - 24172364
Alignment:
Q  403 gagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccg 476  Q
    |||||||||||||||| ||||||||||||||||||||  ||||| ||| ||||||||||||  ||| |||||||    
T  24172291 gagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacccg 24172364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 19477311 - 19477246
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggag 466  Q
    ||||||||||||||| |||||||| |||||||||||| ||| ||||| |||| ||||||||||||||    
T  19477311 agggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagttgcgcggag 19477246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 46373752 - 46373837
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagtt--gcgcggagaggatacccgatttaca 483  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||| |||  ||||||  |||||  || |||||||||||||||    
T  46373752 agggagagcttgccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgatttaca 46373837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 37339785 - 37339714
Alignment:
Q  410 tgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||| |||||| ||||| |||||||||| ||||| |||| ||||||||||   ||||||||||||||||    
T  37339785 tgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattta 37339714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 42741870 - 42741790
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||| | |||| ||||||||| ||| | ||| |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  42741870 agggagaacctgccacccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgattta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Complemental strand, 36821113 - 36821069
Alignment:
Q  429 acaatgctcgagagattattctctgcagttgcgcggagaggatac 473  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatac 36821069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 13254163 - 13254117
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagatta 446  Q
    ||||||||| |||||||||||| | |||||||||||||||| |||||    
T  13254163 agggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 12836959 - 12836867
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||| ||||  ||||||||||  ||||||||||| |||| | ||||||||    
T  12836959 agggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaaa 12836867  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 9536846 - 9536943
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaagataa 497  Q
    ||||||||| | ||| |||||| ||| |||||||||||||| ||||| |||| ||||||||||   ||||||| |  ||||| ||| |||||||||||    
T  9536846 agggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggatatcaaatttatatcaaaaaaagataa 9536943  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 31107554 - 31107481
Alignment:
Q  401 gggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacc 474  Q
    |||||||||| ||| |||||||  |||||||||  ||||||||||| |||||| | ||||||| ||||||||||    
T  31107554 gggagagcttaccgtccatttgattcccacaatattcgagagattagtctctgtaattgcgcgcagaggatacc 31107481  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 481
Target Start/End: Original strand, 31412201 - 31412282
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgattta 481  Q
    ||||||||  |||||||||||||| | ||||||||||||||| |||| ||||  |||||||||   ||||||| ||||||||    
T  31412201 agggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgattta 31412282  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 466
Target Start/End: Original strand, 1534331 - 1534397
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggag 466  Q
    |||||||||||| ||||||||||  || |||||||||||||  |||  |||| ||||||||||||||    
T  1534331 agggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagttgcgcggag 1534397  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 492
Target Start/End: Original strand, 25084140 - 25084205
Alignment:
Q  427 ccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttacatccaaaaaa 492  Q
    |||||||||||||||||||| ||| |||||||  ||| | | ||||||||||||||| | ||||||    
T  25084140 ccacaatgctcgagagattagtctatgcagttatgcgcataagatacccgatttacagctaaaaaa 25084205  T

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Target: scaffold0009 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 27287 - 27212
Alignment:
Q  400 agggagagcttgccgcccatttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggataccc 475  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||| |||  |||||||||||  ||||||||||    
T  27287 agggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggataccc 27212  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 29197 - 29131
Alignment:
Q  417 catttggatcccacaatgctcgagagattattctctgcagttgcgcggagaggatacccgatttaca 483  Q
    ||||||| |||||||||||||| | ||||| ||||  ||||||||||  ||||||||||||||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttaca 29131  T

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