View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_low_13 (Length: 340)
Name: NF6276_low_13
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_13 |
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| [»] scaffold0007 (2 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 182 - 332
Target Start/End: Original strand, 30416585 - 30416736
Alignment:
| Q |
182 |
tcacaatcaaacccttcatcactggttctttctttcattccttctcttaattccgatctccaatctctttcctccatgactttcctcctttaccctacat |
281 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
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| T |
30416585 |
tcacaatcaaacccttcatcactgcttctttctttcattccttctcttaattccgatcttcaatccctttcctacatgactttcctcctttaccctacat |
30416684 |
T |
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| Q |
282 |
cacctccaccaccaccgaagacaaat-ccccatcttcagcctgatttcattt |
332 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
30416685 |
cacctccaccaccactgaagacaaatcccccatcttcagcctgatttcattt |
30416736 |
T |
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Target: scaffold0007 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 76932 - 76794
Alignment:
| Q |
182 |
tcacaatcaaacccttcatcactggttctttctttcattccttctcttaattccgatctccaatctctttcctccatgactttcctcctttaccctacat |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
76932 |
tcacaatcaaacccttaatcactggttctttctttcattccttctcttaattctgatctccaatc-------------cctttcctcctttaacctacat |
76846 |
T |
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| Q |
282 |
cacctccaccaccaccgaagacaaat-ccccatcttcagcctgatttcattt |
332 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
76845 |
cacctccaccaccaccgaagacaaatcccccatcttcagcctgatttcattt |
76794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 76984 - 76942
Alignment:
| Q |
182 |
tcacaatcaaacccttcatcactggttctttctttcattcctt |
224 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||| |
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| T |
76984 |
tcacaatcaaacccttaatcagaggttctttctttcattcctt |
76942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 16587 - 16534
Alignment:
| Q |
189 |
caaacccttcatcactggttctttcttt-cattccttctcttaattccgatctc |
241 |
Q |
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|||| ||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
16587 |
caaaaccttcatcactaattctttctctgcattccttctcttaattccgatctc |
16534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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