View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_low_15 (Length: 308)
Name: NF6276_low_15
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 38220136 - 38220409
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgctttactata |
100 |
Q |
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| T |
38220136 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaaagaaa-tccatattgctttactata |
38220234 |
T |
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| Q |
101 |
taatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacat |
200 |
Q |
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| T |
38220235 |
taatacccaacattggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacat |
38220334 |
T |
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| Q |
201 |
tcactcaatcgacatagactgttggttcaagatcggacggtcctagatttcaagctaggtattttggatgttaat |
275 |
Q |
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| T |
38220335 |
tcacgcaatcgacatagactgttggttcaagatcggacggtcctagatttcaatctaggtattttggattttaat |
38220409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 38242991 - 38243262
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgctttactata |
100 |
Q |
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| T |
38242991 |
cttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgatactcaatctgaaacaaagaaa-tccatgttgct---cacta |
38243086 |
T |
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| Q |
101 |
taatacccaacactggattagtgttacatttcagagttaaatcgagattgagacaaacaaactacaaatttggattccttgcaatctcgagactctacat |
200 |
Q |
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| T |
38243087 |
tgatacccaacaatgggctagtgttacatttaagagttaaatcgagattgagacaaataaattactaatttggattcctagcagccgagagactctacat |
38243186 |
T |
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| Q |
201 |
tcactcaatcgacatagactgttggttc-aagatcggacggtcctagatttcaagctaggtattttggatgttaat |
275 |
Q |
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| T |
38243187 |
tcacgcaatcagcacagactgttggaccaaagatcagaaggtcctagatttcaagctcggtattttggattttaat |
38243262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 38214100 - 38214187
Alignment:
| Q |
3 |
tcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaattaaaatccatattgct |
92 |
Q |
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| T |
38214100 |
tcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaacctgaaacaa--aaaatccatgttgct |
38214187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38238016 - 38238090
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
75 |
Q |
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| T |
38238016 |
cttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaaacaa |
38238090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 38226477 - 38226556
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaattaaa |
80 |
Q |
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| T |
38226477 |
cttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaaataaa |
38226556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 38248192 - 38248264
Alignment:
| Q |
2 |
ttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
75 |
Q |
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| T |
38248192 |
ttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaa |
38248264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38253348 - 38253418
Alignment:
| Q |
5 |
acatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
75 |
Q |
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| T |
38253348 |
acatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcatactcaacctgaaacaa |
38253418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17454573 - 17454647
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
75 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||| |||| ||||||||||||||||||| ||||||||| |
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| T |
17454573 |
cttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctgaaacaa |
17454647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17433494 - 17433568
Alignment:
| Q |
1 |
cttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
75 |
Q |
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|||||||||||||||||||||| | |||| ||||| | || |||| ||||||||||||||||||| ||||||||| |
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| T |
17433494 |
cttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgatactcaatctgaaacaa |
17433568 |
T |
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