View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6276_low_2 (Length: 827)

Name: NF6276_low_2
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6276_low_2
NF6276_low_2
[»] chr7 (1 HSPs)
chr7 (17-811)||(32701655-32702452)


Alignment Details
Target: chr7 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 17 - 811
Target Start/End: Complemental strand, 32702452 - 32701655
Alignment:
Q  17 aaaatgtcattccactagattagagacaagaaggagggaaaaacgtgctttgtcttgaacctgacaatcacaaacacgtgggctttctttcttatctgac 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702452 aaaatgtcattccactagattagagacatgaaggagggaaaaacgtgctttgtcttgaacctgacaatcacaaacacgtgggctttctttcttatctgac 32702353  T
Q  117 aaaacatagcaccagaaaaacctgtatacgttggatatagtttattgttattattgtcttttaatataaataaatttttgaaacaattttctatggttgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32702352 aaaacatagcaccagaaaaacctgtatacgttggatatagtttattgttattattgtcttttaatataaataaatttttgaaacaattttctatggttgc 32702253  T
Q  217 tggaaaaatgaaagaaagaagccaagttgtttgtttgcttttatatataagcagcaagcaggaatacgaatccgaattgaattgaagcaaacaataacaa 316  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||  | |||| |||||  |||||||||||||||||||||||||||    
T  32702252 tggaaaaatgaaagaaagaagccaagttatttgtttgtttttatatataagcaggaat-acgaatccgaatt-gaattgaattgaagcaaacaataacaa 32702155  T
Q  317 tagtggaagattgggaaatccagtaaagttttctccaccatttgccacagacagttcaaacacagaaaatacttggatgatattaagttttgatgacatc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  32702154 tagtggaagattgggaaatccagtaaagttttctccaccatttgccacagacagttcaaacacagaaaatacttggatggtattaagtttcgatgacatc 32702055  T
Q  417 gatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaagatcagaggtccacagtctctactaatc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32702054 gatgatattaatgtattttgataagagaaaatattgtacaaataaattaattttgatgagatagaacctaaagatcagaggaccacagtctctactaatc 32701955  T
Q  517 aaatctattattacattagtatttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaataaaataaaaattatacttataaattcc 616  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32701954 aaatctattattacattagtgtttctatttaattttttcaaagtgtttaatggatgtatctatgtgagaaaataaaataaaaattatacttataaattcc 32701855  T
Q  617 caaaacaactggttacaactagag--------atgcagttcaatttcagctgtcatgtcctagagtagagtacattactacaaagcaggcgtgaagtgtg 708  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||        | ||||||||||| ||||||||||||||||| |||||    
T  32701854 caaaacaactggttacaactagagatgaagaaatgcagttcaatttcagctgtca--------actagagtacattgctacaaagcaggcgtgatgtgtg 32701763  T
Q  709 atagttgatttctaaatctttctttctggcactgccaataattgagctggttt-----atttcatttcatttactcatttagcaactttatgctgcaaat 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| ||||||||||||||    
T  32701762 atagttgatttctaaatctttctttctggcactgccaataattgagctggtttatttcatttcatttcatttactcatttagcaattttatgctgcaaat 32701663  T

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