View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_low_20 (Length: 263)
Name: NF6276_low_20
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 48230513 - 48230752
Alignment:
| Q |
14 |
tactttaacgtgtacatgaaaactaagtattgaaaatggatttagaagagtatta-------cttacaagcaaagacaagattcacatagcatggtaaac |
106 |
Q |
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| T |
48230513 |
tactttaacgtgtacatgaaaactaagtattgaaaatggatttagaagagtattagttacaacttacaagcaaagacaagattcacatagcatggtaaac |
48230612 |
T |
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| Q |
107 |
cttaccacatcttcaagtggtaatgttacagcaaaaaagtttcatgaagcaagaacattaagcaccacatcatcacttctcagaataaaccttggacaga |
206 |
Q |
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| T |
48230613 |
cttaccacatcttcaagtggtaatgttacagcaaaaaagtttcatgaagcaagaacattaagcaccacatcatcacttctcagaataaaccttggacaga |
48230712 |
T |
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| Q |
207 |
ctagtgaaaaggcttccaagtgtcttgtttacagccttat |
246 |
Q |
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| T |
48230713 |
ctagtgaaaaggcttccaagtgtcttgtttacagccttat |
48230752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 48235553 - 48235792
Alignment:
| Q |
14 |
tactttaacgtgtacatgaaaactaagtattgaaaatggatttagaagagtatta-------cttacaagcaaagacaagattcacatagcatggtaaac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48235553 |
tactttaacgtgtacatgaaaactaagtattgaaaatggatttagaagagtattagttacaacttacaagcaaagacaagattcacatagcatggtaaac |
48235652 |
T |
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| Q |
107 |
cttaccacatcttcaagtggtaatgttacagcaaaaaagtttcatgaagcaagaacattaagcaccacatcatcacttctcagaataaaccttggacaga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235653 |
cttaccacatcttcaagtggtaatgttacagcaaaaaagtttcatgaagcaagaacattaagcaccacatcatcacttctcagaataaaccttggacaga |
48235752 |
T |
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| Q |
207 |
ctagtgaaaaggcttccaagtgtcttgtttacagccttat |
246 |
Q |
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| T |
48235753 |
ctagtgaaaaggcttccaagtgtcttgtttacagccttat |
48235792 |
T |
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Back To:
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