View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6276_low_22 (Length: 240)
Name: NF6276_low_22
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38220623 - 38220844
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220623 |
catttaacagtgtatcttaagtagaggcttctctttggacgctcaaaaccttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
38220722 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220723 |
tataatctgaccttattgaccttccatattcatcaactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
38220822 |
T |
|
| Q |
201 |
atcaatggcatgaacgtttagc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38220823 |
atcaatggcatgaacgtttagc |
38220844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38238533 - 38238747
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
38238533 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgcactgtttagaatcataacaacataacaaacctcctt |
38238632 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||| ||||| |
|
|
| T |
38238633 |
tataatctggcctaatagaccttccatattcatccactgtaacattataaagctcacacttacactcagtgcaccctaatttatcctttgtgcctcgcgt |
38238732 |
T |
|
| Q |
201 |
atcaatggcatgaac |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
38238733 |
atcgatggcatgaac |
38238747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38243471 - 38243685
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| ||||||||| |
|
|
| T |
38243471 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaaccttccttcaacttgcactgtgtacaatcataacaacataaccaacctcctt |
38243570 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| || || |
|
|
| T |
38243571 |
tataatctggccttatagaccttccatattcatccaccgtaacattataaagctcgcacttacactcagtgcaccctaacttatcctctacgccacgtgt |
38243670 |
T |
|
| Q |
201 |
atcaatggcatgaac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38243671 |
atcaatggcatgaac |
38243685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38227004 - 38227218
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| |||||||||| |
|
|
| T |
38227004 |
cattttacagtgtatcttaggtagagacttctctttggaccctcaaaaccttccttcaacttgcattgtgtatggtcataacaacataacaaacctcctt |
38227103 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||| ||||| |
|
|
| T |
38227104 |
tataatctggcccaatagaccttccatattcatccactgtaacattataaaggtcgcacttgcactcagtgcaccctaatttatcctctgcgcctcgcgt |
38227203 |
T |
|
| Q |
201 |
atcaatggcatgaac |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38227204 |
atcaatggcatgaac |
38227218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38214581 - 38214795
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| || |||||| || | |||||||||||||| |||||||||| |
|
|
| T |
38214581 |
cattttacagtgtatcttagatagagacttctctttggcccctcaaaaccttccttcaatttacactgtgtataatcataacaacataacaaacctcctt |
38214680 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
38214681 |
cataatctgacctaatagaccttccatattcatccactgtaacattataaagctcacacttacactcggtgcaccctaacttatcctctgcgccgcgcgt |
38214780 |
T |
|
| Q |
201 |
atcaatggcatgaac |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
38214781 |
atcgatggcatgaac |
38214795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38253734 - 38253948
Alignment:
| Q |
1 |
catttaacagtgtatcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctt |
100 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| | |||||||| |
|
|
| T |
38253734 |
catttcactgtgtatcttaagtagaggtttctctttggaccctcaaaaccttccttcaacttgcaccgtgtatgatcataacaacataacatacctcctt |
38253833 |
T |
|
| Q |
101 |
tataatctgaccttattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgt |
200 |
Q |
| |
|
||||||| | ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| | || || || |
|
|
| T |
38253834 |
tataatcaggccttacagaccttccgtactcatccaccgtaacattataaagctcgcacttacactcggtgcaccctaacttatcctctgcacctcgtgt |
38253933 |
T |
|
| Q |
201 |
atcaatggcatgaac |
215 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
38253934 |
atcgatggcatgaac |
38253948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 38248632 - 38248833
Alignment:
| Q |
14 |
atcttaagtagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgacct |
113 |
Q |
| |
|
|||||||||| ||||||||||| || || || ||| ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
38248632 |
atcttaagtaaaggcttctcttaggtccttcgaaaccttccttcaacttgcaccgtgtagaatcataacaacataacaaacctcctttataatctggcct |
38248731 |
T |
|
| Q |
114 |
tattgaccttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatga |
213 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||| ||| |||||||| ||||||||| |
|
|
| T |
38248732 |
aatagattttccatactcatccactgtaacattataaaggtcacacttacattcagtgcaccctaatttatcctctgtgccacgcgtatcgatggcatga |
38248831 |
T |
|
| Q |
214 |
ac |
215 |
Q |
| |
|
|| |
|
|
| T |
38248832 |
ac |
38248833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 17455261 - 17455447
Alignment:
| Q |
28 |
cttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccat |
127 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||| ||| || |||||||||||| | ||||||||||||||||| ||| ||| | |||||||| |
|
|
| T |
17455261 |
cttctctttggtcccttaaaaccttccttcaacttgcattgtgtattatcataacaacatgacaaacctcctttataatcagacattaaaggccttccat |
17455360 |
T |
|
| Q |
128 |
attcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
17455361 |
attcatccactgtaacattataaagctcacacttgcactcagtgcaccctagcttatcctctacgccacgtgtatcgatggcatgaa |
17455447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 17434155 - 17434347
Alignment:
| Q |
22 |
tagaggcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgacc |
121 |
Q |
| |
|
||||| ||||||||||| ||||||||| || ||||||||||||| ||| || |||| ||||||| | ||| |||||||||||| | |||| | | |
|
|
| T |
17434155 |
tagagacttctctttggtccctcaaaacctaccttcaacttgcattgtgtattatcatgacaacatttcataccccctttataatctaaacttaaaggtc |
17434254 |
T |
|
| Q |
122 |
ttccatattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaa |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
17434255 |
ttccatattcatccactgttacattataaagctcacacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaa |
17434347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University