View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_low_5 (Length: 433)
Name: NF6276_low_5
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 40797544 - 40797129
Alignment:
| Q |
1 |
agaaataatagcgacaggaatgccaaggcagacaaacttaagatttcaacacacgctgtgcaaccaagtccatcatcctgttagcccttatattgaacaa |
100 |
Q |
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| T |
40797544 |
agaaataatagtgacaggaatgccaagccagacaaacttaagatttcaacacacgctgtgcaaccaagtccatcatcctgttagccctgatattgaacaa |
40797445 |
T |
|
| Q |
101 |
ttaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacattactaccctcatttattctt |
200 |
Q |
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| T |
40797444 |
tgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacgttactaccctcatttattctt |
40797345 |
T |
|
| Q |
201 |
aaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgttaaccacaaacttggaggttaaacatctcaatgaacttcaaaatt |
300 |
Q |
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| T |
40797344 |
aaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgtcaaccacaaacttggaggttaaacatc-caatgaacttcaaaatt |
40797246 |
T |
|
| Q |
301 |
aaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40797245 |
aaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagt |
40797146 |
T |
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| Q |
401 |
aaattttcactagtctt |
417 |
Q |
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||||||||||||||||| |
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| T |
40797145 |
aaattttcactagtctt |
40797129 |
T |
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