View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6276_low_8 (Length: 373)
Name: NF6276_low_8
Description: NF6276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6276_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 137 - 350
Target Start/End: Original strand, 26170117 - 26170328
Alignment:
| Q |
137 |
tagggaacacaaagagaagatcatgattcttgtgttgaatgcttcttgtggagttcttgaatnnnnnnnnnnnnnncggcattaccaaaagagcatatat |
236 |
Q |
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| T |
26170117 |
tagggaacacaaagagaagatcatgattcttgtgttgaatgcttcttgtggagttcttgaatgagagagagaga--cggcattaccaaaagagcatatat |
26170214 |
T |
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| Q |
237 |
ttaaggaaacttaagagctaggagtggagcttttacgtgagaaaatggagttggaaaacacactctaaacatgttaggtagagagacttcataattagag |
336 |
Q |
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| T |
26170215 |
ttaaagaaatttaagagctaggagtggagcttttacgtgagaaaatggagttggaaaacacactctaaacatgttaggtacagagacttcataattagag |
26170314 |
T |
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| Q |
337 |
tgattcaatctttc |
350 |
Q |
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|||||||||||||| |
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| T |
26170315 |
tgattcaatctttc |
26170328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 26169970 - 26170095
Alignment:
| Q |
16 |
caaaactatggtgaaaaaatgaattataagtagagttttttacctcattgtttgaaagtaccaaaagaggggttacttagaaagtttaaaggtgaagtgt |
115 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169970 |
caaaactgtggtgaaaaaatgacttataagtagagttttttacctcattgtttgaaagtaccaaaagaggggttacttagaaagtttaaaggtgaagtgt |
26170069 |
T |
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| Q |
116 |
agtgccttttgggtgtgtgactaggg |
141 |
Q |
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| T |
26170070 |
ggtgccttttgggtgtgtgactaggg |
26170095 |
T |
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