View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_1 (Length: 760)

Name: NF6277_high_1
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_1
NF6277_high_1
[»] chr2 (1 HSPs)
chr2 (1-760)||(41103157-41103916)
[»] chr4 (1 HSPs)
chr4 (71-135)||(23129044-23129108)


Alignment Details
Target: chr2 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 1 - 760
Target Start/End: Original strand, 41103157 - 41103916
Alignment:
Q  1 agcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103157 agcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgtt 41103256  T
Q  101 ctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatatcagcgaaacacgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  41103257 ctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatatcagcgaaacacgatt 41103356  T
Q  201 ctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103357 ctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaacca 41103456  T
Q  301 acacttgattttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataata 400  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103457 acacttcattttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataata 41103556  T
Q  401 gattttctcacgattaagtaaatattcacacattctttactgtaaccggtgaaaatcatacactctgcaatagctttcaaatcagcaacagcagacatag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103557 gattttctcacgattaagtaaatattcacacattctttactgtaaccggtgaaaatcatacactctgcaatagctttcaaatcagcaacagcagacatag 41103656  T
Q  501 atactgagtctgctgcgagtgatgagccgtcgtcgtcagagaattcctcgtcagaagaactactccgacgatcagtggaagaacgaacagagatcgattc 600  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41103657 atactgagtctgctgcgagtgatgagccgtcgtcgtcggagaattcctcgtcagaagaactactccgacgatcagtggaagaacgaaaagagatcgattc 41103756  T
Q  601 agagtcaaatcggtctctattctgtgataatattccataaaattcattttcgagtttctttatggcgagttgcattaaggattgagcttcaacgagtttt 700  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103757 agagtcgaatcggtctctattctgtgataatattccataaaattcattttcgagtttctttatggcgagttgcattaaggattgagcttcaacgagtttt 41103856  T
Q  701 ttggaggtggaatcacgtgcgacgaggtacatcatagcggattgtagactcttaacggct 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41103857 ttggaggtggaatcacgtgcgacgaggtacatcatagcggattgtagactcttaacggct 41103916  T

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Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
Q  71 tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc 135  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  23129044 tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc 23129108  T

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