View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_12 (Length: 498)

Name: NF6277_high_12
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_12
NF6277_high_12
[»] chr5 (33 HSPs)
chr5 (17-480)||(4555135-4555599)
chr5 (186-286)||(4554664-4554763)
chr5 (179-229)||(9142047-9142097)
chr5 (186-234)||(26712381-26712429)
chr5 (186-234)||(26982119-26982167)
chr5 (108-178)||(32944462-32944532)
chr5 (107-174)||(32943516-32943583)
chr5 (180-258)||(6804802-6804880)
chr5 (38-104)||(9872703-9872768)
chr5 (38-104)||(9877818-9877883)
chr5 (38-104)||(39903705-39903770)
chr5 (38-104)||(39908818-39908883)
chr5 (186-259)||(4789527-4789600)
chr5 (179-219)||(473052-473092)
chr5 (177-245)||(2319264-2319332)
chr5 (178-234)||(6805950-6806006)
chr5 (186-226)||(16689600-16689640)
chr5 (179-226)||(1970515-1970562)
chr5 (186-225)||(6803955-6803994)
chr5 (107-174)||(16689592-16689659)
chr5 (108-157)||(3309489-3309538)
chr5 (109-158)||(4789521-4789570)
chr5 (108-177)||(6007633-6007702)
chr5 (40-73)||(13556586-13556619)
chr5 (185-226)||(17766569-17766610)
chr5 (44-73)||(25183988-25184017)
chr5 (109-174)||(26712370-26712435)
chr5 (109-174)||(26982108-26982173)
chr5 (192-225)||(42651581-42651614)
chr5 (108-156)||(4301905-4301953)
chr5 (186-226)||(26711575-26711615)
chr5 (186-226)||(26981312-26981352)
chr5 (179-231)||(32943517-32943569)
[»] chr1 (44 HSPs)
chr1 (179-331)||(14925240-14925390)
chr1 (195-331)||(11469097-11469234)
chr1 (177-283)||(31787476-31787581)
chr1 (178-286)||(11469707-11469814)
chr1 (186-286)||(31788218-31788317)
chr1 (193-286)||(14924688-14924780)
chr1 (179-288)||(11426853-11426961)
chr1 (177-288)||(7463413-7463523)
chr1 (37-104)||(1187688-1187754)
chr1 (38-104)||(3465333-3465398)
chr1 (179-288)||(7464010-7464118)
chr1 (176-274)||(4641716-4641813)
chr1 (179-226)||(36272548-36272595)
chr1 (186-225)||(46134619-46134658)
chr1 (179-226)||(47334901-47334948)
chr1 (38-104)||(28574157-28574222)
chr1 (38-104)||(28598169-28598234)
chr1 (179-228)||(294625-294674)
chr1 (178-251)||(11031430-11031503)
chr1 (179-288)||(11427447-11427555)
chr1 (108-177)||(37422395-37422464)
chr1 (178-226)||(6768119-6768167)
chr1 (432-464)||(11469362-11469394)
chr1 (44-104)||(13654195-13654254)
chr1 (31-107)||(17415457-17415532)
chr1 (37-73)||(19310715-19310751)
chr1 (179-275)||(37889879-37889974)
chr1 (37-104)||(10186854-10186920)
chr1 (179-226)||(29334214-29334261)
chr1 (179-226)||(38932129-38932176)
chr1 (179-226)||(43316357-43316404)
chr1 (38-73)||(43358641-43358676)
chr1 (40-71)||(44524300-44524331)
chr1 (186-241)||(49420091-49420146)
chr1 (192-226)||(45922245-45922279)
chr1 (25-73)||(29681479-29681528)
chr1 (38-107)||(35624874-35624942)
chr1 (108-177)||(42646017-42646086)
chr1 (186-215)||(49420967-49420996)
chr1 (179-251)||(11032195-11032267)
chr1 (186-226)||(30466189-30466229)
chr1 (186-226)||(36385675-36385715)
chr1 (178-226)||(37423077-37423125)
chr1 (186-226)||(42383727-42383767)
[»] chr4 (48 HSPs)
chr4 (179-286)||(6247412-6247519)
chr4 (179-331)||(6246784-6246937)
chr4 (193-286)||(10421523-10421615)
chr4 (193-288)||(15481049-15481143)
chr4 (186-248)||(232028-232090)
chr4 (196-286)||(15481512-15481601)
chr4 (105-174)||(33369906-33369975)
chr4 (178-286)||(45331395-45331502)
chr4 (227-331)||(10420965-10421067)
chr4 (107-174)||(33370857-33370924)
chr4 (209-288)||(50710357-50710435)
chr4 (178-229)||(55514352-55514403)
chr4 (179-283)||(30808621-30808724)
chr4 (40-107)||(3424981-3425047)
chr4 (179-226)||(23425208-23425255)
chr4 (179-226)||(25970804-25970851)
chr4 (179-286)||(30809447-30809553)
chr4 (209-288)||(53664242-53664320)
chr4 (108-174)||(232031-232097)
chr4 (35-73)||(3415428-3415466)
chr4 (38-104)||(35090775-35090840)
chr4 (38-104)||(35095888-35095953)
chr4 (38-107)||(34279770-34279838)
chr4 (243-288)||(50709723-50709767)
chr4 (186-226)||(231443-231483)
chr4 (38-70)||(14646547-14646579)
chr4 (186-226)||(25970113-25970153)
chr4 (186-226)||(54006735-54006775)
chr4 (37-104)||(54859435-54859500)
chr4 (38-104)||(32429562-32429628)
chr4 (179-226)||(36450728-36450775)
chr4 (179-226)||(47376852-47376899)
chr4 (179-226)||(47377599-47377646)
chr4 (186-284)||(6680286-6680383)
chr4 (108-177)||(17512185-17512254)
chr4 (178-236)||(45330564-45330622)
chr4 (192-226)||(47326790-47326824)
chr4 (192-226)||(47341586-47341620)
chr4 (107-149)||(54453094-54453136)
chr4 (108-157)||(25970106-25970155)
chr4 (432-464)||(22499528-22499560)
chr4 (186-234)||(23383317-23383365)
chr4 (180-228)||(25370507-25370555)
chr4 (38-73)||(30020129-30020165)
chr4 (177-221)||(32449315-32449359)
chr4 (186-226)||(41261129-41261169)
chr4 (244-288)||(53665026-53665069)
chr4 (186-226)||(54008455-54008495)
[»] scaffold0189 (2 HSPs)
scaffold0189 (174-331)||(12757-12912)
scaffold0189 (179-283)||(12184-12287)
[»] chr2 (34 HSPs)
chr2 (179-283)||(4975696-4975799)
chr2 (179-283)||(4993604-4993707)
chr2 (186-288)||(4976445-4976546)
chr2 (186-288)||(4994352-4994453)
chr2 (186-288)||(41519865-41519966)
chr2 (179-286)||(37545676-37545782)
chr2 (186-288)||(42370890-42370991)
chr2 (186-288)||(42369650-42369751)
chr2 (37-104)||(16284296-16284362)
chr2 (107-174)||(36390956-36391023)
chr2 (179-234)||(36719015-36719070)
chr2 (38-104)||(30283720-30283785)
chr2 (186-226)||(36390964-36391004)
chr2 (209-288)||(8536826-8536904)
chr2 (179-258)||(41768712-41768791)
chr2 (38-104)||(39196151-39196216)
chr2 (186-226)||(24383063-24383104)
chr2 (179-236)||(37546555-37546612)
chr2 (179-227)||(5005462-5005510)
chr2 (107-155)||(23876064-23876112)
chr2 (186-226)||(36391673-36391713)
chr2 (179-226)||(7868142-7868189)
chr2 (213-288)||(8536171-8536245)
chr2 (186-225)||(15602822-15602861)
chr2 (38-73)||(17720805-17720840)
chr2 (122-177)||(30544741-30544796)
chr2 (38-73)||(45120276-45120311)
chr2 (203-233)||(4386202-4386232)
chr2 (47-104)||(42780043-42780099)
chr2 (186-226)||(2307074-2307114)
chr2 (186-226)||(23876064-23876104)
chr2 (186-226)||(30486942-30486982)
chr2 (186-250)||(34617660-34617724)
chr2 (179-219)||(44094825-44094865)
[»] chr8 (35 HSPs)
chr8 (179-286)||(12350596-12350702)
chr8 (179-288)||(43924490-43924598)
chr8 (178-283)||(43971277-43971381)
chr8 (179-286)||(12349967-12350073)
chr8 (201-288)||(39257656-39257742)
chr8 (179-286)||(43924960-43925066)
chr8 (186-286)||(43972028-43972127)
chr8 (179-242)||(32574793-32574856)
chr8 (213-288)||(38686337-38686411)
chr8 (38-107)||(43957128-43957196)
chr8 (209-288)||(33801529-33801607)
chr8 (209-288)||(38686995-38687073)
chr8 (107-174)||(40450968-40451035)
chr8 (38-104)||(14318894-14318959)
chr8 (38-104)||(25953438-25953503)
chr8 (38-104)||(26982155-26982220)
chr8 (38-104)||(26987268-26987333)
chr8 (38-104)||(34108089-34108154)
chr8 (108-157)||(35839722-35839771)
chr8 (432-464)||(12350385-12350417)
chr8 (186-226)||(35840531-35840571)
chr8 (186-222)||(35943083-35943119)
chr8 (186-226)||(40450987-40451027)
chr8 (179-226)||(13935054-13935101)
chr8 (209-288)||(33802313-33802391)
chr8 (179-226)||(42345394-42345441)
chr8 (107-149)||(6012968-6013010)
chr8 (297-331)||(12350546-12350580)
chr8 (38-104)||(14315190-14315255)
chr8 (107-149)||(35943075-35943117)
chr8 (177-226)||(7054088-7054137)
chr8 (44-73)||(10341242-10341271)
chr8 (108-157)||(35840529-35840578)
chr8 (37-73)||(18608906-18608942)
chr8 (186-214)||(38660083-38660111)
[»] chr3 (35 HSPs)
chr3 (179-286)||(38337419-38337525)
chr3 (179-288)||(38336944-38337050)
chr3 (18-104)||(6858314-6858399)
chr3 (39-104)||(20890921-20890984)
chr3 (38-104)||(4049667-4049732)
chr3 (38-104)||(4054801-4054866)
chr3 (38-104)||(5458291-5458356)
chr3 (38-104)||(5481767-5481832)
chr3 (38-104)||(6853231-6853296)
chr3 (38-104)||(8458171-8458236)
chr3 (38-104)||(8464610-8464675)
chr3 (38-104)||(10586461-10586526)
chr3 (38-104)||(10591574-10591639)
chr3 (38-104)||(10673217-10673282)
chr3 (38-104)||(10678332-10678397)
chr3 (38-104)||(31076681-31076746)
chr3 (38-104)||(31081786-31081851)
chr3 (38-104)||(33703160-33703225)
chr3 (186-226)||(45501295-45501335)
chr3 (174-226)||(51420856-51420908)
chr3 (176-256)||(52398999-52399079)
chr3 (38-73)||(1302524-1302559)
chr3 (39-104)||(33702880-33702944)
chr3 (186-225)||(33968188-33968227)
chr3 (179-226)||(43768026-43768073)
chr3 (186-233)||(49288669-49288716)
chr3 (179-284)||(44022031-44022135)
chr3 (107-157)||(44064188-44064238)
chr3 (39-72)||(3187733-3187766)
chr3 (192-273)||(15450239-15450318)
chr3 (177-226)||(19132813-19132862)
chr3 (184-225)||(20313433-20313474)
chr3 (179-219)||(42108370-42108410)
chr3 (186-226)||(45297556-45297596)
chr3 (186-226)||(49161809-49161849)
[»] chr7 (34 HSPs)
chr7 (178-261)||(46759228-46759311)
chr7 (186-287)||(46757431-46757531)
chr7 (179-286)||(27599211-27599317)
chr7 (178-286)||(27600037-27600144)
chr7 (186-233)||(35771253-35771300)
chr7 (179-221)||(9122650-9122692)
chr7 (108-174)||(32548655-32548721)
chr7 (107-156)||(5064645-5064694)
chr7 (37-104)||(14610224-14610290)
chr7 (37-107)||(4181659-4181728)
chr7 (38-104)||(11056485-11056550)
chr7 (38-104)||(12856649-12856714)
chr7 (38-104)||(14615290-14615355)
chr7 (38-104)||(26050881-26050946)
chr7 (38-104)||(26055994-26056059)
chr7 (38-104)||(26060240-26060305)
chr7 (38-104)||(26065353-26065418)
chr7 (186-283)||(12732254-12732350)
chr7 (186-222)||(6730162-6730198)
chr7 (105-149)||(6730164-6730208)
chr7 (186-226)||(24995859-24995899)
chr7 (186-226)||(24996684-24996724)
chr7 (37-73)||(35352569-35352605)
chr7 (177-245)||(45887277-45887345)
chr7 (38-73)||(12851564-12851599)
chr7 (38-73)||(37460120-37460155)
chr7 (179-245)||(45887962-45888028)
chr7 (108-157)||(14629819-14629868)
chr7 (103-156)||(24995847-24995900)
chr7 (177-226)||(46756268-46756317)
chr7 (38-73)||(5436809-5436845)
chr7 (186-226)||(14629826-14629866)
chr7 (186-226)||(29060740-29060780)
chr7 (186-226)||(42607088-42607128)
[»] chr6 (13 HSPs)
chr6 (179-286)||(27763413-27763519)
chr6 (179-226)||(24125972-24126019)
chr6 (38-104)||(21275633-21275698)
chr6 (38-70)||(20752397-20752429)
chr6 (432-464)||(34034630-34034662)
chr6 (179-226)||(24126719-24126766)
chr6 (179-217)||(8383191-8383229)
chr6 (108-169)||(29290123-29290184)
chr6 (178-223)||(4311192-4311237)
chr6 (40-73)||(24509109-24509142)
chr6 (40-73)||(24509593-24509626)
chr6 (186-222)||(16764932-16764968)
chr6 (177-225)||(25371167-25371215)
[»] scaffold0391 (1 HSPs)
scaffold0391 (38-104)||(16467-16532)
[»] scaffold0223 (2 HSPs)
scaffold0223 (38-104)||(7256-7321)
scaffold0223 (38-73)||(2298-2333)
[»] scaffold0006 (1 HSPs)
scaffold0006 (44-104)||(143956-144015)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-70)||(170711-170743)
[»] scaffold0150 (1 HSPs)
scaffold0150 (179-221)||(14012-14054)
[»] scaffold0129 (2 HSPs)
scaffold0129 (108-177)||(43197-43266)
scaffold0129 (186-226)||(43219-43259)
[»] scaffold0071 (1 HSPs)
scaffold0071 (192-273)||(11873-11952)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 480
Target Start/End: Complemental strand, 4555599 - 4555135
Alignment:
Q  17 atatcttgaaaggaatttgttggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgacaggtggggtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4555599 atatcttgaaaggaatttgttggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacctaaaagttagtgtgacaggtggggtt 4555500  T
Q  117 tagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaagggtggcatttagtatgggaaagggaagttgtttcccac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4555499 tagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaagggtggcatttagtatgggaaagggaagttgtttcctac 4555400  T
Q  217 catgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaacnnnnnnnccatattggcccaccacttg 316  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||| ||        ||||||||||||||| ||||    
T  4555399 catgggaaagctaattttgaacgttggataaagtggagaacata-cttttatcgtagacactcaacacc-aattttttttccatattggcccaccgcttg 4555302  T
Q  317 cagctgtcccaactcnnnnnnnnnnctttccttcccgtttttgttgttctttcttaaaggcttcatgaa-nnnnnnnnnatcccaaaacggatctcaaaa 415  Q
    |||||||||||||||          ||||||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||||||||    
T  4555301 cagctgtcccaactctcttttatttctttccttcccgtttttgttgttctttctcaaaggcttcatgaatgatttttttatcccaaaacggatctcaaaa 4555202  T
Q  416 ataa--agagnnnnnnnncttggattggatttgggtgtggtttttcagttttgccttcaggaattag 480  Q
    ||||  ||||         |||||||||||||||||||||||||||| |||||||||||||||||||    
T  4555201 ataaagagagaaaaaaaaattggattggatttgggtgtggtttttcaattttgccttcaggaattag 4555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 4554664 - 4554763
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    |||||||||||||||| || |||||| |||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  4554664 tttagtatgggaaaggaaaattgttttccaccatgagaaagctaattttgaccattagataaagtagagaacata-cttttatcatagacactcaacacc 4554762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 9142047 - 9142097
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagcta 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9142047 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagcta 9142097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 26712429 - 26712381
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaatttt 234  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26712429 tttagcatgggaaagggaagttgtttcccaccatgggaaagctaatttt 26712381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 26982167 - 26982119
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaatttt 234  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26982167 tttagcatgggaaagggaagttgtttcccaccatgggaaagctaatttt 26982119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 32944532 - 32944462
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaag 178  Q
    |||||||||||||||||||||||  | || ||||||| ||||  |||||||||||||||||||||||||||    
T  32944532 ggtggggtttagcatgggaaatgatacttgtttcccaccatggaaaagttaatgttagccattagattaag 32944462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 32943516 - 32943583
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    ||||||| |||||||||||||| |  | || ||||||| |||| ||||||||||||||||||||||||    
T  32943516 aggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagat 32943583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 6804880 - 6804802
Alignment:
Q  180 gtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaaca 258  Q
    ||||||||||| |||||  || |||||||||||||||||||||||||  |||||||| |||| ||| | ||| ||||||    
T  6804880 gtggcatttagcatgggtcagtgaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaaca 6804802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 9872703 - 9872768
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  9872703 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 9872768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 9877818 - 9877883
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  9877818 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 9877883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 39903770 - 39903705
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  39903770 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 39903705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 39908883 - 39908818
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  39908883 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 39908818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 4789527 - 4789600
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacat 259  Q
    ||||| ||||||||||| ||||||||||||||||||||||| || | |||| |||| ||| || | ||||||||    
T  4789527 tttagcatgggaaaggggagttgtttcccaccatgggaaagttattcttgaccattagatcaaatggagaacat 4789600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 473092 - 473052
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccat 219  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  473092 ggtggcatttaatatgggaaagggaagtcgtttcccaccat 473052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 2319264 - 2319332
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggat 245  Q
    ||||||||||||| | |||||||||  |||| ||||||||||||||||||||  || ||| ||||||||    
T  2319264 agggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggat 2319332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 6806006 - 6805950
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaatttt 234  Q
    ||||| ||||||| |||||||||||||   |||||||||||||||||| ||||||||    
T  6806006 gggtgacatttagcatgggaaagggaaagagtttcccaccatgggaaaactaatttt 6805950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 16689600 - 16689640
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  16689600 tttagtatgggaaagggaagttctttcccaccatggaaaag 16689640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 1970562 - 1970515
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  1970562 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaag 1970515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 6803955 - 6803994
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  6803955 tttagtatgggaaagggaagttgtttcctaccataggaaa 6803994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 16689592 - 16689659
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||  ||||| ||| ||| | |||||||    
T  16689592 aggtggggtttagtatgggaaagggaagttctttcccaccatggaaaagtaaattttaactattagat 16689659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 3309489 - 3309538
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    |||| |||||||||||||||| ||||||||||||| || ||| |||||||    
T  3309489 ggtgaggtttagcatgggaaagggaagttctttcctatgatgggaaagtt 3309538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 4789521 - 4789570
Alignment:
Q  109 gtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtta 158  Q
    |||||||||||||||||||| || |||| ||||||| |||| ||||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagtta 4789570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 6007702 - 6007633
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    |||||||||||| |||||||| |||| || |||||||| ||| ||||||| || || |||||| ||||||    
T  6007702 ggtggggtttagaatgggaaagggaatttgtttcccatgatgggaaagttgattttggccatttgattaa 6007633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 13556586 - 13556619
Alignment:
Q  40 tcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||| ||||||||    
T  13556586 tcattcctattgcatccaatatacatttattggt 13556619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 17766569 - 17766610
Alignment:
Q  185 atttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||||  ||||||||||||||||| |||||    
T  17766569 atttagtatgggaaaggatagttgtttcccaccatgagaaag 17766610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 25184017 - 25183988
Alignment:
Q  44 tcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||||||    
T  25184017 tcctattgcatccaatatacagttattggt 25183988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26712435 - 26712370
Alignment:
Q  109 gtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||| ||||||||||||||| ||||||| ||||||| |||| ||||| |||| ||| |||| ||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagat 26712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 26982173 - 26982108
Alignment:
Q  109 gtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||| ||||||||||||||| ||||||| ||||||| |||| ||||| |||| ||| |||| ||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaagctaattttaaccatcagat 26982108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 42651614 - 42651581
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaa 225  Q
    |||||||||||||||||||||||||||| |||||    
T  42651614 atgggaaagggaagttgtttcccaccataggaaa 42651581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 4301905 - 4301953
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagt 156  Q
    |||||||||||  |||| ||| |||||||||||||||||||| ||||||    
T  4301905 ggtggggtttaatatggaaaagggaagttctttcccatcatgggaaagt 4301953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 26711575 - 26711615
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||| ||||||||||||| ||| ||||||    
T  26711575 tttagtatgggaaaggaaagttgtttcccaacataggaaag 26711615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 26981312 - 26981352
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||| ||||||||||||| ||| ||||||    
T  26981312 tttagtatgggaaaggaaagttgtttcccaacataggaaag 26981352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 32943517 - 32943569
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaat 231  Q
    ||||| |||||| ||||||||||  | ||||||||||||||||||||| ||||    
T  32943517 ggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagttaat 32943569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 179 - 331
Target Start/End: Complemental strand, 14925390 - 14925240
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||| |||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||    
T  14925390 ggtggcgtttaatttggggaaggaaagttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacata-cttttatcatagacact 14925292  T
Q  279 caacaccaaacnnnnnnnccatattggcccaccacttgcagctgtcccaactc 331  Q
    |||||||| |        |||||||||||||||||||||||||| ||||||||    
T  14925291 caacaccaga-tttttttccatattggcccaccacttgcagctgccccaactc 14925240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 331
Target Start/End: Original strand, 11469097 - 11469234
Alignment:
Q  195 ggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa--cnnn 292  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||| |          
T  11469097 ggaaagggaagttgtttcccaccatgggaaagctaattttgaccattagataaggtagagaacata-cttttatcatagacactcaacaccagatttttt 11469195  T
Q  293 nnnnccatattggcccaccacttgcagctgtcccaactc 331  Q
         ||||||||||||||||||||||||||||||||||    
T  11469196 tttttcatattggcccaccacttgcagctgtcccaactc 11469234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 283
Target Start/End: Original strand, 31787476 - 31787581
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagaca 276  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||||| |    
T  31787476 agggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattagataaagtagagaacata-cttttatcatagaga 31787574  T
Q  277 ctcaaca 283  Q
    |||||||    
T  31787575 ctcaaca 31787581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 11469814 - 11469707
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacac 277  Q
    ||||| |||||| | |||||||||||||||||||  |||||||| ||| |||||||||| |||| |||||||||||||||||| |||||||||||||||     
T  11469814 gggtgacatttaatttgggaaagggaagttgtttttcaccatggaaaaactaattttgaccattagataaagtagagaacata-cttttatcatagacat 11469716  T
Q  278 tcaacacca 286  Q
    |||||||||    
T  11469715 tcaacacca 11469707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 31788317 - 31788218
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||||| |||||| |||||||||||||||||    
T  31788317 tttagtatgggaatgagaagttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacata-cttttaccatagacactcaacacc 31788219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 14924688 - 14924780
Alignment:
Q  193 tgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||  || || |||||||||||  ||||||||||||||||||||||||    
T  14924688 tgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttaaattaaatagagaacata-tttttatcatagacactcaacacca 14924780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 11426853 - 11426961
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||| |||| ||||||||   ||||||||||||||||||||||||||||| |||| ||| || || |||||| |  |||||||||||||  |    
T  11426853 ggtggcatttagcatggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaactaaagaacaca-gttttatcatagaccat 11426951  T
Q  279 caacaccaaa 288  Q
    ||||||||||    
T  11426952 caacaccaaa 11426961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 7463413 - 7463523
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagaca 276  Q
    |||||||||||||| |||| ||||| ||   ||||||||||||||||||||||||||||| |||| ||| || || |||||| |  |||||||||||||     
T  7463413 agggtggcatttagcatggaaaaggaaaagagtttcccaccatgggaaagctaattttgaccattagattaaataaagaacaca-gttttatcatagacc 7463511  T
Q  277 ctcaacaccaaa 288  Q
     |||||||||||    
T  7463512 atcaacaccaaa 7463523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 1187754 - 1187688
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||| |||||||||||||||||||||||||||||||  ||| |||||||||| |||| |||||||||    
T  1187754 tggtctttcctattgcatccaatatacagttattggt-gggggcgaatcaaacctaaaggttagtgtg 1187688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 3465398 - 3465333
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||| ||| |||| |||||||||    
T  3465398 ggtcattcctattgcatccaatatacatttattggt-ggggacgaatcgaacctaaaggttagtgtg 3465333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 7464118 - 7464010
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||  |||| ||||||||   |||||||||||||||||| |||||||||| |||  ||| || ||||||||| | | ||||||||||||  |    
T  7464118 ggtggcatttaacatggaaaagggaaagagtttcccaccatgggaaaactaattttgaccatcagattaactagagaacacaac-tttatcatagaccat 7464020  T
Q  279 caacaccaaa 288  Q
    ||||||||||    
T  7464019 caacaccaaa 7464010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 4641813 - 4641716
Alignment:
Q  176 aagggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaa-cattggataaagtagagaacataccttttatcataga 274  Q
    ||||||||  ||||| ||||||||||| | ||||||||||||| ||||||| ||||||| || |||||||| || |||||||||||  ||||||||||||    
T  4641813 aagggtggagtttagcatgggaaaggggaattgtttcccaccaagggaaag-taattttcaaccattggatcaaatagagaacata-gttttatcataga 4641716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 36272595 - 36272548
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  36272595 ggtggcatttagcatgggaatgggaacttgtttcccaccatgggaaag 36272548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 46134658 - 46134619
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  46134658 tttagtatgggaaagggaagttgtttcccatcatgggaaa 46134619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 47334948 - 47334901
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  47334948 ggtggcatttagtatgggaaaagggagttgtttcccaccataggaaag 47334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 28574222 - 28574157
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  28574222 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 28574157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 28598234 - 28598169
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  28598234 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 28598169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 294625 - 294674
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagct 228  Q
    |||||| ||||||||||||| ||| |||| ||||||||||||||||||||    
T  294625 ggtggcgtttagtatgggaatggggagttttttcccaccatgggaaagct 294674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 11031430 - 11031503
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagta 251  Q
    ||||||||||||  ||||||||||| | | ||||||||||||||||||| ||| ||||| |||| ||| |||||    
T  11031430 gggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagattaagta 11031503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 11427555 - 11427447
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||| |||| ||||||||   |||| | ||||||||||| |||||||||| |||  ||| || ||||||||| | | ||||||||||||  |    
T  11427555 ggtggcatttagcatggaaaagggaaagagttttctaccatgggaaaactaattttgaccatcagattaactagagaacacaac-tttatcatagaccat 11427457  T
Q  279 caacaccaaa 288  Q
    ||||||||||    
T  11427456 caacaccaaa 11427447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 37422395 - 37422464
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    ||||||||||| ||||| ||| |||||||||||||||||||| |||||| ||| ||   |||||||||||    
T  37422395 ggtggggtttatcatggaaaaaggaagttctttcccatcatgggaaagtaaatatttatcattagattaa 37422464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 6768167 - 6768119
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||| ||||||| ||||| || ||||||||||||||||||    
T  6768167 gggtggcatttagcatgggaatgggaacttatttcccaccatgggaaag 6768119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 11469362 - 11469394
Alignment:
Q  432 cttggattggatttgggtgtggtttttcagttt 464  Q
    |||||||||||||||||||||||||||||||||    
T  11469362 cttggattggatttgggtgtggtttttcagttt 11469394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 13654254 - 13654195
Alignment:
Q  44 tcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||||||  ||| |||||| ||| |||| |||||||||    
T  13654254 tcctattgcatccaatatacagttattggt-gggggcgaatcgaacctaaaggttagtgtg 13654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 17415457 - 17415532
Alignment:
Q  31 atttgttggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||  ||| | |||| ||| |||| ||||||||||||    
T  17415457 atttgatggtcattcctatttcatccaatatacaattattggt-gggggcaaatcgaacctaaatgttagtgtgaca 17415532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 19310751 - 19310715
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggt 73  Q
    |||||||||||||||||||||||||| ||||||||||    
T  19310751 tggtcattcctattgcatccaatatagagttattggt 19310715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 37889879 - 37889974
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagac 275  Q
    |||||||||||| |||  ||||||||   |||||||||||||||||||| |||||||| |||| ||| || || |||||| |  |||||||||||||    
T  37889879 ggtggcatttagcatgaaaaagggaaagagtttcccaccatgggaaagcgaattttgaccattagattaactaaagaacaca-gttttatcatagac 37889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 10186854 - 10186920
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||| ||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  10186854 tggtcatttctattgcatccaatatacaattattggt-gggggcgaatcgaacctaaaggttagtgtg 10186920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 29334214 - 29334261
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  29334214 ggtggcatttagcatgggaatggatagttgtttcccaccatgggaaag 29334261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 38932176 - 38932129
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  38932176 ggtggcatttagcatgggaaaaggaagttgttttccaccataggaaag 38932129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 43316357 - 43316404
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  43316357 ggtggcatttagcatgggaatggatagttgtttcccaccatgggaaag 43316404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 43358676 - 43358641
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||| ||||||||||||||||||||||||||||||    
T  43358676 ggtcactcctattgcatccaatatacagttattggt 43358641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 44524300 - 44524331
Alignment:
Q  40 tcattcctattgcatccaatatacagttattg 71  Q
    ||||||||||||||||||||||||||||||||    
T  44524300 tcattcctattgcatccaatatacagttattg 44524331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 49420091 - 49420146
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacatt 241  Q
    |||||||||||||||| |||||||||||||  |||||||||||  |||||| ||||    
T  49420091 tttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccatt 49420146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 45922245 - 45922279
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  45922245 atgggaaagggaggttgtttcccaccatgggaaag 45922279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29681528 - 29681479
Alignment:
Q  25 aaaggaatttgttggtcattcct-attgcatccaatatacagttattggt 73  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||||||    
T  29681528 aaagggatttgccggtcattccttattgcatccaatatacagttattggt 29681479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 35624942 - 35624874
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    ||||| |||||||||||||||||||||||| |||||  ||| |||||| ||| |||| |||||| |||||    
T  35624942 ggtcactcctattgcatccaatatacagttgttggt-gggggcgaatcgaacctaaaggttagtatgaca 35624874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 42646086 - 42646017
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    |||||||||||| |||||||| ||||||  ||| |||| ||| ||||||| || ||||||||| ||||||    
T  42646086 ggtggggtttagtatgggaaagggaagtagttttccataatgggaaagttgatcttagccatttgattaa 42646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 215
Target Start/End: Complemental strand, 49420996 - 49420967
Alignment:
Q  186 tttagtatgggaaagggaagttgtttccca 215  Q
    ||||||||||||||||||||||||||||||    
T  49420996 tttagtatgggaaagggaagttgtttccca 49420967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 11032267 - 11032195
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagta 251  Q
    |||||||||||  ||||||||||| | | ||||||||||||||||||| | | ||||| |||| ||| |||||    
T  11032267 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagta 11032195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 30466189 - 30466229
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  30466189 tttagcatgggaatggggagttgtttcccaccatgggaaag 30466229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 36385675 - 36385715
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||| ||||||||||||||| ||| ||||||||||    
T  36385675 tttagtatggaaaagggaagttgttttccatcatgggaaag 36385715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 37423125 - 37423077
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||| ||||| |||  ||||| ||||||||||||||||||    
T  37423125 gggtggcatttagcatgggtaagcaaagttttttcccaccatgggaaag 37423077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 42383727 - 42383767
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||| |||||||||||| | ||||||||||    
T  42383727 tttagtatgggaaagagaagttgtttcctatcatgggaaag 42383767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 6247519 - 6247412
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||||||||||||||| || ||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  6247519 ggtggcgtttaatttgggaaagggaagttgtttctcatcatgggaaaactaattttgatcattagataaagtagagaacatactttttatcatagacact 6247420  T
Q  279 caacacca 286  Q
    ||||||||    
T  6247419 caacacca 6247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 6246784 - 6246937
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| |||||||||||||||||    
T  6246784 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaagttaattttgaccattagataaggtagagaacata-cttttatcatagacact 6246882  T
Q  279 caacacca--aacnnnnnnnccatattggcccaccacttgcagctgtcccaactc 331  Q
    ||||| ||            |||||||||||||||||||||||||||||||||||    
T  6246883 caacatcattttttttttttccatattggcccaccacttgcagctgtcccaactc 6246937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 10421615 - 10421523
Alignment:
Q  193 tgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacca 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||| | || ||| || |||||||||||  ||||||||||||||||||||||||    
T  10421615 tgggaaagggaagttgttttccaccatgggaaagctaattttgaccgttagattaaatagagaacata-tttttatcatagacactcaacacca 10421523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 15481049 - 15481143
Alignment:
Q  193 tgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    |||| |||||||||||||||||  |||||||||||||||||||| | || ||| || |||||||||||  ||||||||||||| ||||||||||||    
T  15481049 tggggaagggaagttgtttcccgtcatgggaaagctaattttgaccgttagattaaatagagaacata-tttttatcatagactctcaacaccaaa 15481143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 232090 - 232028
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaa 248  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||    
T  232090 tttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagataaa 232028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 286
Target Start/End: Complemental strand, 15481601 - 15481512
Alignment:
Q  196 gaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacca 286  Q
    ||||||||||||||||||||| |||||||| |||||||||| |  | ||| || |||||||||||  |||||||||||| |||||||||||    
T  15481601 gaaagggaagttgtttcccacaatgggaaaactaattttgaccggtagattaaatagagaacata-tttttatcatagaaactcaacacca 15481512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 33369906 - 33369975
Alignment:
Q  105 acaggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    ||||||||| ||||||||||||||||  | || ||||||| |||| ||||||||||||||||||||||||    
T  33369906 acaggtgggatttagcatgggaaatgatatttgtttcccaccatgggaaagttaatgttagccattagat 33369975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 45331502 - 45331395
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacac 277  Q
    ||||||||||||  ||| ||||||| ||||||||||||||||| ||||| ||| ||||| |||| ||| |||||  ||||| |  | |||||||||||||    
T  45331502 gggtggcatttaaaatgagaaaggggagttgtttcccaccatgagaaagttaaatttgaccattagattaagtaatgaacaca-ttcttatcatagacac 45331404  T
Q  278 tcaacacca 286  Q
    |||||||||    
T  45331403 tcaacacca 45331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 10420965 - 10421067
Alignment:
Q  227 ctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaacnnnnnnnccatattggcccaccacttgcagctgtccc 326  Q
    |||||||||| |||| |||||| |||| ||||||| |||||||||||||||||||||||| |        |||||||| ||||||||||||||||| |||    
T  10420965 ctaattttgaccattagataaactagataacatac-ttttatcatagacactcaacaccaga-tttttttccatattgacccaccacttgcagctgcccc 10421062  T
Q  327 aactc 331  Q
    |||||    
T  10421063 aactc 10421067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 33370924 - 33370857
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||||||||||||||||||||| |  | || ||||||| |||| ||||||||||||||||||||||||    
T  33370924 aggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat 33370857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 50710435 - 50710357
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||||||  ||| |||| |||| |||||||||||||||||    |||||||||||||||||||||||||    
T  50710435 tttcccaccatgggaaagtaaatattgaccattagataaagtagagaacat-gaatttatcatagacactcaacaccaaa 50710357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 55514403 - 55514352
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagcta 229  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  55514403 gggtgccatttagcatgggaaaggaaagttgtttcccaccatgggaaagcta 55514352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 30808621 - 30808724
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacatacctt-ttatcatagacac 277  Q
    |||||||||||  ||||||||||  ||||||||||||||||||||||| ||| ||||| |||| ||| |||||  ||  |||| || |||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatga--atacattcttatcatagacac 30808718  T
Q  278 tcaaca 283  Q
    ||||||    
T  30808719 tcaaca 30808724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 3424981 - 3425047
Alignment:
Q  40 tcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    |||||||||||||||||||||| |||||||||||  |||| ||||| ||| |||| ||||||||||||    
T  3424981 tcattcctattgcatccaatattcagttattggtggggga-gaatcgaacctaaaggttagtgtgaca 3425047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 23425255 - 23425208
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||    
T  23425255 ggtggcatttagtatgggaatggagagttgtttcccaccatgggaaag 23425208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 25970851 - 25970804
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  25970851 ggtggcatttagtatgggaaaagggagttgtttcccaccatgagaaag 25970804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 30809553 - 30809447
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||  ||||||||||| |||||||| |||||||| ||||| ||| ||||| || | ||| |||||  ||||| |  ||||||||||||| ||    
T  30809553 ggtggcatttaaaatgggaaaggggagttgttttccaccatgagaaagttaaatttgaccactagattaagtaatgaacaca-tttttatcatagactct 30809455  T
Q  279 caacacca 286  Q
    ||||||||    
T  30809454 caacacca 30809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 53664242 - 53664320
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||||||  ||| |||| |||| |||||| ||||||||||   ||||||||||||||||||||| ||||    
T  53664242 tttcccaccatgggaaagtaaatattgaccattagataaaatagagaacat-ggttttatcatagacactcaacatcaaa 53664320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 232097 - 232031
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||||||||||| |||||||| ||||||| ||||||| |||| |||||| ||| ||| |||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 3415428 - 3415466
Alignment:
Q  35 gttggtcattcctattgcatccaatatacagttattggt 73  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3415428 gttggtcattcctattacatccaatatacagttattggt 3415466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 35090840 - 35090775
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  35090840 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 35090775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 35095953 - 35095888
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  35095953 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 35095888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 34279770 - 34279838
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    ||||||||||||||||| ||||||||||||||||||  ||| |||||| ||  |||| ||||||||||||    
T  34279770 ggtcattcctattgcattcaatatacagttattggt-gggggcgaatcgaagctaaaggttagtgtgaca 34279838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 50709723 - 50709767
Alignment:
Q  243 gataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  50709723 gataaagtagagaacatag-ttttatcatagacactcaacaccaaa 50709767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 231443 - 231483
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  231443 tttagtatgggaaagggaagttgttttctaccatgggaaag 231483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 14646547 - 14646579
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttatt 70  Q
    |||||||||||||||||||||||||||||||||    
T  14646547 ggtcattcctattgcatccaatatacagttatt 14646579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 25970113 - 25970153
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaag 25970153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 54006735 - 54006775
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  54006735 tttagtatgggaatgggaagttgtttcccatcatgggaaag 54006775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 54859435 - 54859500
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||| ||||||||||||||||||||||| ||||||||  |||||||||  ||| |||| |||||||||    
T  54859435 tggtaattcctattgcatccaatatacaattattggt--gggacgaattgaacataaaggttagtgtg 54859500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 32429562 - 32429628
Alignment:
Q  38 ggtcattcct-attgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||| ||||||||||||||||||||||||||  ||| |||||| ||| |||| |||||||||    
T  32429562 ggtcattccttattgcatccaatatacagttattggt-gggggcgaatcgaacctaaaggttagtgtg 32429628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 36450728 - 36450775
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||    
T  36450728 ggtggtatttagcatgggaaaggggagttgttttccaccatgggaaag 36450775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 47376852 - 47376899
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||||||    
T  47376852 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 47376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 47377646 - 47377599
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||| |||||| | |||||||||| |||||||||||||||||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaag 47377599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 6680383 - 6680286
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacac 284  Q
    ||||| |||||||||||||   ||||| |||||||||||||  ||| |||| |||| ||| ||||| ||||||||  ||||||||||||  ||||||||    
T  6680383 tttagcatgggaaagggaaagagtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacata-gttttatcatagattctcaacac 6680286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 17512254 - 17512185
Alignment:
Q  108 ggtggggtttagcatgggaaatgga-agttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    |||||||||||||||| ||| |||| |||| |||||||||||| |||||| ||| |||| |||||||||||    
T  17512254 ggtggggtttagcatgagaa-tggatagttgtttcccatcatgggaaagtaaattttagtcattagattaa 17512185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 45330564 - 45330622
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttga 236  Q
    |||||| |||||  ||||||||||| |||||||||||||||||| |||| ||| |||||    
T  45330564 gggtggaatttaaaatgggaaaggggagttgtttcccaccatggaaaagttaaatttga 45330622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 47326824 - 47326790
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||| ||||||||||||||||||||||||    
T  47326824 atgggaaaggaaagttgtttcccaccatgggaaag 47326790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 47341620 - 47341586
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||| ||||||||||||||||||||||||    
T  47341620 atgggaaaggaaagttgtttcccaccatgggaaag 47341586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 54453094 - 54453136
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatg 149  Q
    |||||||||||||||||||||  ||||||| ||||||||||||    
T  54453094 aggtggggtttagcatgggaatgggaagttgtttcccatcatg 54453136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 25970106 - 25970155
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    ||||||||||||||||||||| || |||| ||||||| |||| |||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagtt 25970155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 464
Target Start/End: Original strand, 22499528 - 22499560
Alignment:
Q  432 cttggattggatttgggtgtggtttttcagttt 464  Q
    ||||||||| |||||||||||||||||||||||    
T  22499528 cttggattgaatttgggtgtggtttttcagttt 22499560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 23383317 - 23383365
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaatttt 234  Q
    ||||| ||| ||||||  ||||||||||||||||||||||| |||||||    
T  23383317 tttagaatgagaaaggagagttgtttcccaccatgggaaagttaatttt 23383365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 25370507 - 25370555
Alignment:
Q  180 gtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagct 228  Q
    |||||||||| | |||||||||  |||| ||||||||||||||||||||    
T  25370507 gtggcatttaatttgggaaaggctagttttttcccaccatgggaaagct 25370555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 30020129 - 30020165
Alignment:
Q  38 ggtcattcct-attgcatccaatatacagttattggt 73  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30020129 ggtcattccttattgcatccaatatacagttattggt 30020165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 32449315 - 32449359
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgg 221  Q
    ||||||| |||||||||||||||||  | ||||||||||||||||    
T  32449315 agggtgggatttagtatgggaaaggatacttgtttcccaccatgg 32449359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 41261129 - 41261169
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||||||| ||||||||| ||||||||||||||    
T  41261129 tttagcatgggaaaggaaagttgttttccaccatgggaaag 41261169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 53665069 - 53665026
Alignment:
Q  244 ataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||||   ||||||||||||||||||||||||||    
T  53665069 ataaagtagagaacatgg-ttttatcatagacactcaacaccaaa 53665026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 54008495 - 54008455
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||| |||||||||||||| | ||||||||||    
T  54008495 tttagtatgggaatgggaagttgtttccaatcatgggaaag 54008455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 174 - 331
Target Start/End: Complemental strand, 12912 - 12757
Alignment:
Q  174 ttaagggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatag 273  Q
    |||| |||||| |||| | |||| ||| ||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||| ||||||||||||    
T  12912 ttaatggtggcgtttaatttggggaagtgaagttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacata-cttttatcatag 12814  T
Q  274 acactcaacaccaaacnnnnnnnccatattggcccaccacttgcagctgtcccaactc 331  Q
    |||||||||||| |         |||||||||||||||||||||||||| ||||||||    
T  12813 acactcaacacc-atttttttttccatattggcccaccacttgcagctgccccaactc 12757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 12184 - 12287
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||| ||||||||||||||||||| ||||  ||||||||| | || ||| || |||||||||||  ||||||||||||||||    
T  12184 ggtggcgtttaatttgggaaagagaagttgtttcccaccatgagaaaattaattttgaccgttagattaaatagagaacata-tttttatcatagacact 12282  T
Q  279 caaca 283  Q
    |||||    
T  12283 caaca 12287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 4975696 - 4975799
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||| |||    
T  4975696 ggtggcgtttagtatgggaatgggaagttgtttcccaccatggaaaagctaattttgaccattaaataaagtagagaacata-cttttatcatagagact 4975794  T
Q  279 caaca 283  Q
    |||||    
T  4975795 caaca 4975799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 4993604 - 4993707
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| ||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||  ||||||||||||||||| ||||||||||||| |||    
T  4993604 ggtggcgtttagtatgggaatgggaagttgttttccaccatggaaaagctaattttgaccattaaataaagtagagaacata-cttttatcatagagact 4993702  T
Q  279 caaca 283  Q
    |||||    
T  4993703 caaca 4993707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 4976546 - 4976445
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||||| | | ||||||||||||||| ||||||||| ||||||| | |||| |||||| ||||||||||| |||||| |||||||||||||||||    
T  4976546 tttagtatggggatgagaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata-cttttaccatagacactcaacacc 4976448  T
Q  286 aaa 288  Q
    |||    
T  4976447 aaa 4976445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 4994453 - 4994352
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||||| | | ||||||||||||||| ||||||||| ||||||| | |||| |||||| ||||||||||| |||||| |||||||||||||||||    
T  4994453 tttagtatggggatgagaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata-cttttaccatagacactcaacacc 4994355  T
Q  286 aaa 288  Q
    |||    
T  4994354 aaa 4994352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 41519966 - 41519865
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    |||||||||||||||||||||| |||||||||||||||||| |  |||||| | ||  ||||||||||||||||| |||||| ||||||||| |||||||    
T  41519966 tttagtatgggaaagggaagttttttcccaccatgggaaagttttttttgaccgttaaataaagtagagaacata-cttttaccatagacacccaacacc 41519868  T
Q  286 aaa 288  Q
    |||    
T  41519867 aaa 41519865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 37545676 - 37545782
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||  || |||||||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||  ||||| |  | ||||||||||||||    
T  37545676 ggtggcatttaaaataggaaagggaagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacaca-ttcttatcatagacact 37545774  T
Q  279 caacacca 286  Q
    ||||||||    
T  37545775 caacacca 37545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 42370991 - 42370890
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||||||| || ||||||||||||||||||||||||  ||| |||  |||| |||||||| ||||| |||  ||||||||||||||||| |||||    
T  42370991 tttagtatgggaatggaaagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatata-gttttatcatagacactcgacacc 42370893  T
Q  286 aaa 288  Q
    |||    
T  42370892 aaa 42370890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 42369650 - 42369751
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    |||||||||| ||||| ||||||||||   |||||||||||  ||| ||   |||| ||||||||||||||||||  |||||||||||||||||||||||    
T  42369650 tttagtatggaaaaggaaagttgtttcaatccatgggaaagtaaatattagccattagataaagtagagaacataa-ttttatcatagacactcaacacc 42369748  T
Q  286 aaa 288  Q
    |||    
T  42369749 aaa 42369751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 16284362 - 16284296
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||||||||||||||||||||||||||||||  ||| |||||| ||| |||||| |||||||    
T  16284362 tggtcattcctattgcatccaatatacagttattggt-gggggcgaatcgaacctaaaaggtagtgtg 16284296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 36390956 - 36391023
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||| ||| |||||||||    
T  36390956 aggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 36719070 - 36719015
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaatttt 234  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||    
T  36719070 ggtggcatttagtatgggaaaggaaacttgtttcctaccataggaaagctaatttt 36719015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 30283720 - 30283785
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| |||||||| |||||||||    
T  30283720 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacttaaaggttagtgtg 30283785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 36390964 - 36391004
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  36390964 tttagcatgggaaagggaagttgtttcccaccatgggaaag 36391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 8536904 - 8536826
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||| ||||||| ||||  ||| |||| |||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  8536904 tttcctaccatggaaaagtaaatgttgaccattagataaagtagagaacatgg-ttttatcatagacactcaacaccaaa 8536826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 41768791 - 41768712
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaaca 258  Q
    |||||||||||| |||||  || |||||||||||||||||||||||||  |||||||| |||| ||| | ||| ||||||    
T  41768791 ggtggcatttagcatgggtcagtgaagttgtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaaca 41768712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 39196151 - 39196216
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  39196151 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 39196216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 24383104 - 24383063
Alignment:
Q  186 tttagtatgggaaagggaagttgttt-cccaccatgggaaag 226  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  24383104 tttagtatgggaaagggaagttgtttccccaccatgggaaag 24383063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 37546612 - 37546555
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttga 236  Q
    |||||||||||  ||||||||||| |||||||||||| |||||||||| ||| |||||    
T  37546612 ggtggcatttaaaatgggaaaggggagttgtttcccatcatgggaaagttaaatttga 37546555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 5005462 - 5005510
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagc 227  Q
    |||||||||||| ||||||||||| | |||||||||| |||||||||||    
T  5005462 ggtggcatttagcatgggaaaggggaattgtttcccatcatgggaaagc 5005510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 23876112 - 23876064
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaag 155  Q
    ||||||||||||||||||||||||| |||| ||||||| |||| |||||    
T  23876112 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 36391713 - 36391673
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  36391713 tttagtatgggaaaggggagttgttttccaccatgggaaag 36391673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 7868189 - 7868142
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  7868189 ggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaag 7868142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 8536171 - 8536245
Alignment:
Q  213 ccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||  ||| ||||  ||| |||||||||||||||||   ||||||||||||||||||||| ||||    
T  8536171 ccaccatgggaaagtaaatattgacgattagataaagtagagaacat-gattttatcatagacactcaacatcaaa 8536245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 15602861 - 15602822
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  15602861 tttagcataggaaagggaagttgtttcccaccatgggaaa 15602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 17720805 - 17720840
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||| ||||||||    
T  17720805 ggtcattcctattgcatccaatatacatttattggt 17720840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 30544741 - 30544796
Alignment:
Q  122 tgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    ||||||||||||||| |||||||| ||| ||||||| || ||||||||| ||||||    
T  30544741 tgggaaatggaagttgtttcccatgatgggaaagttgattttagccatttgattaa 30544796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 45120311 - 45120276
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45120311 ggtcattcctattgcatccaatatacatttattggt 45120276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 233
Target Start/End: Complemental strand, 4386232 - 4386202
Alignment:
Q  203 aagttgtttcccaccatgggaaagctaattt 233  Q
    |||||||||||||||||||||||||||||||    
T  4386232 aagttgtttcccaccatgggaaagctaattt 4386202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 42780099 - 42780043
Alignment:
Q  47 tattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||||||||||||||||||||  ||| |||||| ||| |||| |||||||||    
T  42780099 tattgcatccaatatacagttattggt-gggggcgaatcgaacctaaaggttagtgtg 42780043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 2307114 - 2307074
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  2307114 tttagcatgggaaagggaagttgttttccaccatgagaaag 2307074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 23876104 - 23876064
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| |||||||| || |||||||||||||||||||||||    
T  23876104 tttagcatgggaaatgggagttgtttcccaccatgggaaag 23876064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 30486982 - 30486942
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  30486982 tttagtatgggtaagtgaagttttttcccaccatgggaaag 30486942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 34617660 - 34617724
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagt 250  Q
    ||||| ||||||||||  | ||||||||||||||||||||| || |||||| |||| ||| ||||    
T  34617660 tttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagattaagt 34617724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 44094865 - 44094825
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccat 219  Q
    ||||| |||||| |||||||||| |||||||||||||||||    
T  44094865 ggtgggatttagcatgggaaaggaaagttgtttcccaccat 44094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 12350702 - 12350596
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||||||| |||||||||||||||||||| |||||||||| |||| ||||| |||||||||||| |||||||||||||||||    
T  12350702 ggtggcgtttaatttgggaaagggaaattgtttcccaccatgggaaacctaattttgaccattagataaggtagagaacata-cttttatcatagacact 12350604  T
Q  279 caacacca 286  Q
    ||||||||    
T  12350603 caacacca 12350596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 43924490 - 43924598
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | || ||| || |||||||||||  |||||||||| |||||    
T  43924490 ggtggcatttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacata-tttttatcataaacact 43924588  T
Q  279 caacaccaaa 288  Q
    ||||||||||    
T  43924589 caacaccaaa 43924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 43971277 - 43971381
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacac 277  Q
    ||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||| ||    
T  43971277 gggtggcgtttagtatggaaatgagaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacata-cttttatcatagagac 43971375  T
Q  278 tcaaca 283  Q
    ||||||    
T  43971376 tcaaca 43971381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 12349967 - 12350073
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | ||||||||||||||||||||||||||||| ||| |||||||| | |||| ||||||||| |||||||  |||||||||||||||||    
T  12349967 ggtggcgtttaatttgggaaagggaagttgtttcccaccatggaaaaactaattttaaccattagataaagtaaagaacat-gcttttatcatagacact 12350065  T
Q  279 caacacca 286  Q
    ||||||||    
T  12350066 caacacca 12350073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 39257656 - 39257742
Alignment:
Q  201 ggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||| |||||||| ||||    
T  39257656 ggaagttgtttcccaccatgggaaagctaattttgaccattaaataaagtagagaacata-cttttatcatagagactcaacatcaaa 39257742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 43925066 - 43924960
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||||||||||||||||||||||| ||||| ||||||||| | || ||| || |||||||||||  ||||||||||||||||    
T  43925066 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgagaaagttaattttgaccgttagattaaatagagaacata-tttttatcatagacact 43924968  T
Q  279 caacacca 286  Q
    ||||||||    
T  43924967 caacacca 43924960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 43972127 - 43972028
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||| ||| | ||||||||||||||| ||||||||| ||||||| | |||| |||||| ||||||||||| |||||| |||||||||||||||||    
T  43972127 tttagtatgagaatgagaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacata-cttttaccatagacactcaacacc 43972029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 32574856 - 32574793
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattg 242  Q
    |||||| |||| |||||||| | |||||||||||||||||||| |||||||||||| |||||||    
T  32574856 ggtggcgtttaatatgggaatgagaagttgtttcccaccatggtaaagctaattttcaacattg 32574793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 38686337 - 38686411
Alignment:
Q  213 ccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||  ||| |||| |||| |||||||||||||||||   ||||||||||||||||||||||||||    
T  38686337 ccaccatgggaaagtaaatattgaccattagataaagtagagaacat-ggttttatcatagacactcaacaccaaa 38686411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 43957128 - 43957196
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| ||||||||||||    
T  43957128 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtgaca 43957196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 33801529 - 33801607
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||| ||||  ||| |||| ||||  ||||||||||||||||   ||||||||||||||||||||||||||    
T  33801529 tttcccaccatggaaaagtaaatattgaccattaaataaagtagagaacatgg-ttttatcatagacactcaacaccaaa 33801607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 38687073 - 38686995
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    |||||||| |||||||||  ||| |||| |||| |||||||||||||||||   ||||||||||||||||||||| ||||    
T  38687073 tttcccacaatgggaaagtaaatattgatcattagataaagtagagaacat-gattttatcatagacactcaacatcaaa 38686995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 40451035 - 40450968
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    ||||||||||||| |||||||||| ||||| ||||||| |||| |||||| ||| ||| |||||||||    
T  40451035 aggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaagtaaattttaaccattagat 40450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 14318894 - 14318959
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  14318894 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 14318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 25953438 - 25953503
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||||||||||||| |||||||||||||||  ||| ||||||  ||||||| |||||||||    
T  25953438 ggtcattcctattgcatccattatacagttattggt-gggggcgaatcgtacttaaaggttagtgtg 25953503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 26982155 - 26982220
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26982155 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26982220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 26987268 - 26987333
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26987268 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26987333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 34108154 - 34108089
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  34108154 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 34108089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 35839722 - 35839771
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    ||||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  35839722 ggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaagtt 35839771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 464
Target Start/End: Complemental strand, 12350417 - 12350385
Alignment:
Q  432 cttggattggatttgggtgtggtttttcagttt 464  Q
    |||||||||||||||||||||||||||||||||    
T  12350417 cttggattggatttgggtgtggtttttcagttt 12350385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 35840571 - 35840531
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  35840571 tttagcatgggaaagggaagttgtttcccacgatgggaaag 35840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 35943083 - 35943119
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatggg 222  Q
    ||||| |||||||||||||||||||||||||||||||    
T  35943083 tttagcatgggaaagggaagttgtttcccaccatggg 35943119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 40451027 - 40450987
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  40451027 tttagtatgggaaatgtaagttgtttcccaccatgggaaag 40450987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 13935101 - 13935054
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| |||||||||| ||||||||| ||||||| ||||||    
T  13935101 ggtggcatttagcatgggaaaggaaagttgttttccaccataggaaag 13935054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 33802391 - 33802313
Alignment:
Q  209 tttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacaccaaa 288  Q
    ||||||||||||||||||  ||| |||| ||||  ||||| ||||||||||   ||||||||||||||||||||| ||||    
T  33802391 tttcccaccatgggaaagtaaatattgaccattaaataaaatagagaacat-ggttttatcatagacactcaacatcaaa 33802313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 42345394 - 42345441
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  42345394 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaag 42345441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 6012968 - 6013010
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatg 149  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||    
T  6012968 aggtggggtttagcatggaaaaaggaagttctttcccaccatg 6013010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 12350580 - 12350546
Alignment:
Q  297 ccatattggcccaccacttgcagctgtcccaactc 331  Q
    |||||||||||||||||||| ||||||||||||||    
T  12350580 ccatattggcccaccacttgtagctgtcccaactc 12350546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 14315190 - 14315255
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||| ||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  14315190 ggtcatttctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 14315255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 35943075 - 35943117
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatg 149  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||    
T  35943075 aggtggggtttagcatgggaaagggaagttgtttcccaccatg 35943117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 7054088 - 7054137
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||| ||||||| ||  |||||||||||||||||| ||||    
T  7054088 agggtggcatttagcatgggaatggagagttgtttcccaccatggaaaag 7054137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 10341242 - 10341271
Alignment:
Q  44 tcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||||||    
T  10341242 tcctattgcatccaatatacagttattggt 10341271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 35840578 - 35840529
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    ||||||||||||||||||||| ||||||| |||||||  ||| |||||||    
T  35840578 ggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagtt 35840529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 18608906 - 18608942
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggt 73  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  18608906 tggtcattcctatttcatccaatatacaattattggt 18608942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 38660083 - 38660111
Alignment:
Q  186 tttagtatgggaaagggaagttgtttccc 214  Q
    |||||||||||||||||||||||||||||    
T  38660083 tttagtatgggaaagggaagttgtttccc 38660111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 38337525 - 38337419
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| | || ||| || |||||||||||  ||||||||||||||||    
T  38337525 ggtggcgtttaatttgggaaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacata-tttttatcatagacact 38337427  T
Q  279 caacacca 286  Q
    ||||||||    
T  38337426 caacacca 38337419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 38336944 - 38337050
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| | || ||| || |||||||||||  |||||||  |||||||    
T  38336944 ggtggcatttaatttggggaagggaagttgtttcccaccatgggaaagctaattttgaccgttagattaaatagagaacata-tttttatc--agacact 38337040  T
Q  279 caacaccaaa 288  Q
    ||||||||||    
T  38337041 caacaccaaa 38337050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 6858314 - 6858399
Alignment:
Q  18 tatcttgaaaggaatttgttggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||| || |||||  ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  6858314 tatcttgaaggggatttgccggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 6858399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 20890984 - 20890921
Alignment:
Q  39 gtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||| |||||||||||||||||||||||||||  ||  ||||||||||||||| |||||||||    
T  20890984 gtcattcatattgcatccaatatacagttattggt--ggcgcgaatcaaacttaaaggttagtgtg 20890921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 4049732 - 4049667
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  4049732 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 4049667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 4054866 - 4054801
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  4054866 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 4054801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 5458291 - 5458356
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  5458291 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 5458356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 5481767 - 5481832
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  5481767 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 5481832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 6853231 - 6853296
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  6853231 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 6853296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 8458236 - 8458171
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  8458236 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 8458171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 8464675 - 8464610
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  8464675 ggtcattcctattgcatccaatatacatttattggt-tggggcgaatcgaacctaaaggttagtgtg 8464610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 10586461 - 10586526
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  10586461 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 10586526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 10591574 - 10591639
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  10591574 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 10591639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 10673217 - 10673282
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  10673217 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 10673282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 10678332 - 10678397
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  10678332 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 10678397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 31076681 - 31076746
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  31076681 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 31076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 31081786 - 31081851
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  31081786 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 31081851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 33703225 - 33703160
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  33703225 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 33703160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 45501335 - 45501295
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  45501335 tttagtatgggaaaggggagttgttttccaccatgggaaag 45501295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 51420856 - 51420908
Alignment:
Q  174 ttaagggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||| |||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  51420856 ttaacggtggcatttagcatgggaaaaggaagttgttttccaccataggaaag 51420908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 52399079 - 52398999
Alignment:
Q  176 aagggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaa 256  Q
    ||||||||||||||| |||| ||||||||   |||||||| ||||||||||  |||||||| |||| ||| || |||||||    
T  52399079 aagggtggcatttagcatggaaaagggaaagagtttcccatcatgggaaagtaaattttgaccattagattaaatagagaa 52398999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 1302524 - 1302559
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1302524 ggtcattcctattgcatccaatatacatttattggt 1302559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 33702880 - 33702944
Alignment:
Q  39 gtcattcctattgcatccaatatacagttattggtaaggga-cgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||||||||||||||||||| ||||||||  |||| |||||| ||| |||| |||||||||    
T  33702880 gtcattcctattgcatccaatatacatttattggt--gggagcgaatcgaacctaaaggttagtgtg 33702944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 33968188 - 33968227
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  33968188 tttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 43768026 - 43768073
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  43768026 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaag 43768073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 49288716 - 49288669
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattt 233  Q
    |||||||||||||||  ||||||| |||||||||| ||||||||||||    
T  49288716 tttagtatgggaaagcaaagttgtctcccaccatgagaaagctaattt 49288669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 44022135 - 44022031
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattgga-taaagtagagaacataccttttatcatagacac 277  Q
    |||||||||||| |||| |||||  |||||||| |||||||||||||   || ||||| |||| || |||| ||| ||||||| ||||||||||| ||||    
T  44022135 ggtggcatttagcatggaaaaggagagttgttttccaccatgggaaaaaaaaatttgaccattagattaaactag-gaacata-cttttatcatacacac 44022038  T
Q  278 tcaacac 284  Q
    |||||||    
T  44022037 tcaacac 44022031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 44064188 - 44064238
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    ||||||||| ||| |||| ||| |||||||||||||||||||| |||||||    
T  44064188 aggtggggtatagtatggaaaagggaagttctttcccatcatgggaaagtt 44064238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 3187733 - 3187766
Alignment:
Q  39 gtcattcctattgcatccaatatacagttattgg 72  Q
    |||||||||||||||||||||||| |||||||||    
T  3187733 gtcattcctattgcatccaatatatagttattgg 3187766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 15450239 - 15450318
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatag 273  Q
    |||||||||||||   |||||| |||||||||||| |||| |||| |||| ||| ||||||||||||||  |||||||||||    
T  15450239 atgggaaagggaaagagtttcc-accatgggaaagttaatcttgaccattagattaagtagagaacata-tttttatcatag 15450318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 19132862 - 19132813
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||| |||||| | ||||||||| ||||| ||||||||||||||||||    
T  19132862 agggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaag 19132813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 20313474 - 20313433
Alignment:
Q  184 catttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    |||||||||||||||||||||||  ||||||| |||||||||    
T  20313474 catttagtatgggaaagggaagtattttcccatcatgggaaa 20313433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 42108370 - 42108410
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccat 219  Q
    |||||| |||| | |||||||||||||||||||||||||||    
T  42108370 ggtggcgtttaatttgggaaagggaagttgtttcccaccat 42108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 45297556 - 45297596
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||||||||  |||||||||||| ||||||||||    
T  45297556 tttagtatgggaaaggagagttgtttcccatcatgggaaag 45297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 49161849 - 49161809
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  49161849 tttagcatgggaaaggggaattgtttcccaccatgggaaag 49161809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 46759311 - 46759228
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacatac 261  Q
    ||||||||||||||||||||||||| |||||||||||| ||| | ||||||||| |||| |||| |||||||||||||||||||    
T  46759311 gggtggcatttagtatgggaaaggggagttgtttcccatcatagcaaagctaatcttgaccattagataaagtagagaacatac 46759228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 46757431 - 46757531
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaacacc 285  Q
    ||||||||||||||| | |||||||| |||||||| |||||  ||| |||| |||| ||||||||||||||||||  |||||||||||||||||||||||    
T  46757431 tttagtatgggaaagaggagttgttttccaccatgagaaagtaaatattgaccattagataaagtagagaacata-attttatcatagacactcaacacc 46757529  T
Q  286 aa 287  Q
    ||    
T  46757530 aa 46757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 27599211 - 27599317
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||||| ||| ||||| |||| ||| |||||  ||||| |  | ||||||||||||||    
T  27599211 ggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacaca-ttcttatcatagacact 27599309  T
Q  279 caacacca 286  Q
    ||||||||    
T  27599310 caacacca 27599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 27600144 - 27600037
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacac 277  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||| ||| ||||| || | ||| |||||  ||||| |  | ||||||||||| |    
T  27600144 gggtggcatttaaaatgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccactagattaagtaatgaacaca-ttcttatcatagactc 27600046  T
Q  278 tcaacacca 286  Q
    |||||||||    
T  27600045 tcaacacca 27600037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 35771300 - 35771253
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattt 233  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||    
T  35771300 tttagtatgggaaagcaaagttgtttcccaccatgggaaagctaattt 35771253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 9122650 - 9122692
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgg 221  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  9122650 ggtggcatttagcatgggaaagggaagttgtttcccaccatgg 9122692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 32548721 - 32548655
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagat 174  Q
    |||||||||||| ||||||||||  | || ||||||| |||| ||||||||||||||||||||||||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaagttaatgttagccattagat 32548655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 5064694 - 5064645
Alignment:
Q  107 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagt 156  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  5064694 aggtggggtttagcatgggaatgggaagttctttcccatcatgggaaagt 5064645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 14610290 - 14610224
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  14610290 tggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 14610224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 4181659 - 4181728
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtgaca 107  Q
    |||||||||| ||||||||||||||| ||||||||||  |||| ||||| ||| |||| ||||||||||||    
T  4181659 tggtcattccaattgcatccaatatagagttattggt-ggggaagaatcgaacctaaaggttagtgtgaca 4181728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 11056550 - 11056485
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    |||||||| |||||||||||||||||||||||||||  ||| ||||||| || |||| |||||||||    
T  11056550 ggtcattcatattgcatccaatatacagttattggt-gggggcgaatcacacataaaggttagtgtg 11056485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 12856714 - 12856649
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  12856714 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 12856649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 14615355 - 14615290
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  14615355 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 14615290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 26050946 - 26050881
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26050946 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26050881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 26056059 - 26055994
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26056059 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26055994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 26060305 - 26060240
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26060305 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26060240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 26065418 - 26065353
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  26065418 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 26065353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 12732254 - 12732350
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacactcaaca 283  Q
    ||||| |||||||||||||   |||||||||||||||||||  ||| |||| |||| ||| | ||| ||||||||  ||||||||||||| |||||||    
T  12732254 tttagcatgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacata-gttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 6730198 - 6730162
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatggg 222  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6730198 tttagcatgggaaagggaagttgtttcccaccatggg 6730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 6730208 - 6730164
Alignment:
Q  105 acaggtggggtttagcatgggaaatggaagttctttcccatcatg 149  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||    
T  6730208 acaggtggggtttagcatgggaaagggaagttgtttcccaccatg 6730164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 24995859 - 24995899
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  24995859 tttagaatgggaaaggggagttgtttcccaccatgggaaag 24995899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 24996724 - 24996684
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  24996724 tttagcatgggaaaggggagttgtttcccaccatgggaaag 24996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 35352569 - 35352605
Alignment:
Q  37 tggtcattcctattgcatccaatatacagttattggt 73  Q
    |||||||||||||||||||||||||||| ||||||||    
T  35352569 tggtcattcctattgcatccaatatacaattattggt 35352605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 45887277 - 45887345
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggat 245  Q
    |||||||| |||| | |||||||||  |||| ||||||||||||||||||||  |||||| ||||||||    
T  45887277 agggtggcgtttaatttgggaaaggctagttttttcccaccatgggaaagctttttttgaccattggat 45887345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 12851599 - 12851564
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||| ||||||||    
T  12851599 ggtcattcctattgcatccaatatacatttattggt 12851564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 37460120 - 37460155
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    |||||||| |||||||||||||||||||||||||||    
T  37460120 ggtcattcttattgcatccaatatacagttattggt 37460155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 45888028 - 45887962
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggat 245  Q
    ||||||||||| | |||||||||  |||| ||||||||||||||||||||  || ||| ||||||||    
T  45888028 ggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggat 45887962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 14629819 - 14629868
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagtt 157  Q
    ||||| |||||| |||||||| ||||||||||| |||||||| |||||||    
T  14629819 ggtggagtttagtatgggaaagggaagttcttttccatcatgggaaagtt 14629868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 24995847 - 24995900
Alignment:
Q  103 tgacaggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagt 156  Q
    ||||||||||||||||| |||||||| || |||| ||||||| |||| ||||||    
T  24995847 tgacaggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaagt 24995900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 46756268 - 46756317
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||| |||| | ||||||||||||||||||| ||||||||| ||||    
T  46756268 agggtggcgtttaatttgggaaagggaagttgttttccaccatggaaaag 46756317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 5436809 - 5436845
Alignment:
Q  38 ggtcattcct-attgcatccaatatacagttattggt 73  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5436809 ggtcattccttattgcatccaatatacagttattggt 5436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 14629826 - 14629866
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||||||||||||||| ||| ||| ||||||||||    
T  14629826 tttagtatgggaaagggaagttcttttccatcatgggaaag 14629866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 29060780 - 29060740
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  29060780 tttagcatgggaaaggggaattgtttcccaccatgggaaag 29060740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 42607088 - 42607128
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  42607088 tttagcatgggaaaggggaattgtttcccaccatgggaaag 42607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 27763413 - 27763519
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatagacact 278  Q
    |||| |||||| | |||| ||||||||||||||||||||| |||||| |||||||||| | || ||| || |||||||||||  |||||||| |||||||    
T  27763413 ggtgacatttaatttggggaagggaagttgtttcccaccaagggaaaactaattttgaccgttagattaaatagagaacata-tttttatcaaagacact 27763511  T
Q  279 caacacca 286  Q
    ||||||||    
T  27763512 caacacca 27763519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 24125972 - 24126019
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaag 24126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 21275698 - 21275633
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  21275698 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 21275633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 20752397 - 20752429
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttatt 70  Q
    |||||||||||||||||||||||||||||||||    
T  20752397 ggtcattcctattgcatccaatatacagttatt 20752429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 464
Target Start/End: Complemental strand, 34034662 - 34034630
Alignment:
Q  432 cttggattggatttgggtgtggtttttcagttt 464  Q
    |||||||||||||||||||||||||||||||||    
T  34034662 cttggattggatttgggtgtggtttttcagttt 34034630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 24126766 - 24126719
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||||||    
T  24126766 ggtggcatttaatttgggaaaggggagttgtttcccatcatgggaaag 24126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 8383191 - 8383229
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccacc 217  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  8383191 ggtggcatttagtataggaaaggggagttgtttcccacc 8383229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 29290123 - 29290184
Alignment:
Q  108 ggtggggtttagcatgggaaatgga-agttctttcccatcatgtgaaagttaatgttagccat 169  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||| |||||||||||||| ||||    
T  29290123 ggtggggtttagcatgg-aaatggagagttgtttcccaccatgggaaagttaatgttaaccat 29290184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 4311237 - 4311192
Alignment:
Q  178 gggtggcatttagtatgggaaagggaagttgtttcccaccatggga 223  Q
    ||||||| ||||||||||| ||| |||||| |||||||||||||||    
T  4311237 gggtggcgtttagtatgggtaagtgaagttttttcccaccatggga 4311192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 24509109 - 24509142
Alignment:
Q  40 tcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||| ||||||||||    
T  24509109 tcattcctattgcatccaatatatagttattggt 24509142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 24509626 - 24509593
Alignment:
Q  40 tcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||| ||||||||||    
T  24509626 tcattcctattgcatccaatatatagttattggt 24509593  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 16764932 - 16764968
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatggg 222  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  16764932 tttagcatgggaaaggaaagttgtttcccaccatggg 16764968  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 25371167 - 25371215
Alignment:
Q  177 agggtggcatttagtatgggaaagggaagttgtttcccaccatgggaaa 225  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||||||||    
T  25371167 agggtggggtttagcatgggaaagtgaacttgtttcccaccatgggaaa 25371215  T

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Target: scaffold0391 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 16532 - 16467
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  16532 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 16467  T

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Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 7256 - 7321
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||| ||| |||| |||||||||    
T  7256 ggtcattcctattgcatccaatatacatttattggt-gggggcgaatcgaacctaaaggttagtgtg 7321  T

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Target: scaffold0223; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 2298 - 2333
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttattggt 73  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2298 ggtcattcctattgcatccaatatacatttattggt 2333  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 144015 - 143956
Alignment:
Q  44 tcctattgcatccaatatacagttattggtaagggacgaatcaaacttaaaagttagtgtg 104  Q
    ||||||||||||||||||||||||||||||  ||| |||||| ||| |||| |||||||||    
T  144015 tcctattgcatccaatatacagttattggt-gggggcgaatcgaacctaaaggttagtgtg 143956  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 170743 - 170711
Alignment:
Q  38 ggtcattcctattgcatccaatatacagttatt 70  Q
    |||||||||||||||||||||||||||||||||    
T  170743 ggtcattcctattgcatccaatatacagttatt 170711  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 14012 - 14054
Alignment:
Q  179 ggtggcatttagtatgggaaagggaagttgtttcccaccatgg 221  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||    
T  14012 ggtgggatttagcatgggaaaggggagttgtttcccaccatgg 14054  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 43266 - 43197
Alignment:
Q  108 ggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagattaa 177  Q
    |||||||||||| |||| ||| || |||| |||||||||||| |||||| ||| ||| |||||| |||||    
T  43266 ggtggggtttagtatggaaaaggggagttgtttcccatcatgggaaagtaaatcttaaccattaaattaa 43197  T

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Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 43259 - 43219
Alignment:
Q  186 tttagtatgggaaagggaagttgtttcccaccatgggaaag 226  Q
    |||||||||| |||||| |||||||||||| ||||||||||    
T  43259 tttagtatggaaaaggggagttgtttcccatcatgggaaag 43219  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 11952 - 11873
Alignment:
Q  192 atgggaaagggaagttgtttcccaccatgggaaagctaattttgaacattggataaagtagagaacataccttttatcatag 273  Q
    |||||||||||||   |||||| |||||||||||| |||| |||| |||| ||| ||||||||||||||  |||||||||||    
T  11952 atgggaaagggaaagagtttcc-accatgggaaagttaatcttgaccattagattaagtagagaacata-tttttatcatag 11873  T

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