View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_2 (Length: 695)
Name: NF6277_high_2
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 91 - 609
Target Start/End: Complemental strand, 3525135 - 3524616
Alignment:
| Q |
91 |
tatcaaatatctctctctgtatgcattaaacaaaatcattgtttatcgttgtnnnnnnntatattgaagtttatattttatattaaattctttaaagtaa |
190 |
Q |
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| T |
3525135 |
tatcaaatatatctctctatatgcattaaacaaaatcattgtttatcgttgtaaaaaaatatattgaagtttatattttatattaaattctttaaagtaa |
3525036 |
T |
|
| Q |
191 |
gactcaaagttaaatacatctagggctccttatgcaagtatgctaacgttagatcccaaccacacat-attttttaaaatataaaatgttagggattatt |
289 |
Q |
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|| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
3525035 |
gaatcaaagttaaatacaactagggtttcttatgcaattatgctaacgttagatcccaaccacacatgattttttaaaatataaaatgttagagcttatt |
3524936 |
T |
|
| Q |
290 |
taaaagtttatttagctaaacatactaggttacaatccacataaagtttttcagatctatcaagtcggcataccaaatggtaaatgtttgaatcagctaa |
389 |
Q |
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|||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
3524935 |
taaaagtttatttagctaaacatatcaggttacgactcacataaagtctttcagatctataaagtcggtataccaaatggtaaatgtttgaatcagctaa |
3524836 |
T |
|
| Q |
390 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagtttattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524835 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagttaattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
3524736 |
T |
|
| Q |
490 |
tcatgattgaggaccaacaatgttttactttaataatcataatcattggctctcaaataaggccttatattcggtggtggaaaattcttggaggaatgct |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3524735 |
tcatgattgaggaccaacaatgttttactttaataatcataatcattggctctcaaataaggccttacattcggtggtggaaaattcttggaggaatgct |
3524636 |
T |
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| Q |
590 |
cctttcctttggagggttga |
609 |
Q |
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| T |
3524635 |
cctttcctttggagggttga |
3524616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 678
Target Start/End: Complemental strand, 3524618 - 3524580
Alignment:
| Q |
640 |
tgataaagggtgaaatcaagaagtggaactgaaaagtgt |
678 |
Q |
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| T |
3524618 |
tgataaagggtgaaatcaagaagtggaactgaaaagtgt |
3524580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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