View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_high_21 (Length: 413)
Name: NF6277_high_21
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_21 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 39 - 413
Target Start/End: Complemental strand, 29877709 - 29877335
Alignment:
| Q |
39 |
tcaggaaaatggactctgataatacggaattcaactatcagataattaaaatactattaaaaaatgtttattaattattgtannnnnnnatgtggctatt |
138 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29877709 |
tcaggaaaatggactctgataatacgaaattcaactatcagataattaaaatactattaaaaaatgtttattaattattgtatttttttatgtggctatt |
29877610 |
T |
|
| Q |
139 |
atttttaggtgtttgttgaatgattataagtgtgctatgaggaatatggcatgtgagatacttgatttgatggcagaagggttaaagattcaaccaaaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29877609 |
atttttaggtgtttgttgaatgattataagtgtgctatgaggaatatggcatgtgagatacttgatttgatggcagaagggttaaagattcaaccaaaga |
29877510 |
T |
|
| Q |
239 |
atgtgtttagcaagcttgtgatggataaacagagtgactctgcttttagggttaatcattaccctgcttgtcctgaattagctataaatggtgaaaattt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29877509 |
atgtgtttagcaagcttgtgatggataaacagagtgactctgcttttagggttaatcattaccctgcttgtcctgaattagctataaatggtgaaaattt |
29877410 |
T |
|
| Q |
339 |
gattgggtttggagaacacacagaccctcaaattatttcacttttgaggtcaaataatacttcaggattccaaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29877409 |
gattgggtttggagaacacacagaccctcaaattatatcacttttgaggtcaaataatacttcaggatttcaaat |
29877335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 21571812 - 21571883
Alignment:
| Q |
330 |
tgaaaatttgattgggtttggagaacacacagaccctcaaattatttcacttttgaggtcaaataatacttc |
401 |
Q |
| |
|
||||||| ||||||| ||||| || |||||||| || ||||| |||||| | |||||||||||||| ||||| |
|
|
| T |
21571812 |
tgaaaatgtgattggttttggtgagcacacagatccacaaataatttcattgttgaggtcaaataacacttc |
21571883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University