View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_25 (Length: 393)

Name: NF6277_high_25
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_25
NF6277_high_25
[»] chr1 (6 HSPs)
chr1 (243-393)||(47189299-47189449)
chr1 (215-326)||(51285250-51285361)
chr1 (210-316)||(48494886-48494992)
chr1 (215-315)||(47508240-47508340)
chr1 (215-273)||(5733165-5733223)
chr1 (215-273)||(12307935-12307993)
[»] chr6 (3 HSPs)
chr6 (78-195)||(4150765-4150890)
chr6 (230-311)||(11139353-11139434)
chr6 (215-315)||(92312-92412)
[»] chr7 (3 HSPs)
chr7 (253-326)||(32635363-32635436)
chr7 (215-315)||(37125557-37125657)
chr7 (215-259)||(11033491-11033535)
[»] chr8 (1 HSPs)
chr8 (215-315)||(39312538-39312638)
[»] scaffold0026 (1 HSPs)
scaffold0026 (218-287)||(91565-91634)
[»] scaffold1342 (1 HSPs)
scaffold1342 (215-273)||(1231-1289)
[»] chr2 (3 HSPs)
chr2 (215-273)||(4009258-4009316)
chr2 (210-299)||(36620177-36620266)
chr2 (215-312)||(43326105-43326202)
[»] chr4 (1 HSPs)
chr4 (215-315)||(55403338-55403438)
[»] chr5 (1 HSPs)
chr5 (219-312)||(13627363-13627456)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 243 - 393
Target Start/End: Original strand, 47189299 - 47189449
Alignment:
Q  243 ccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcacttttttctgaaacaacactc 342  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||    
T  47189299 ccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatgacactatcacttttttctgaaacaacgctc 47189398  T
Q  343 ttctctcttctgtctggccttgcgcgagttcaactttcttctctctcgacc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47189399 ttctctcttctgtctggccttgcgcgagttcaactttcttctctctagacc 47189449  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 51285250 - 51285361
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    ||||||||||||||||||||||| | | ||||||||  ||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  51285250 ggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaaccatgcc 51285349  T
Q  315 actatcactttt 326  Q
    ||  ||||||||    
T  51285350 accctcactttt 51285361  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 48494992 - 48494886
Alignment:
Q  210 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaacc 309  Q
    |||| |||||| |||||||||||||||| ||| |||||  |  |||||||||| ||  |||||| |||||||||||||||||||||||||||||||||||    
T  48494992 acagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacc 48494893  T
Q  310 atgccac 316  Q
    |||||||    
T  48494892 atgccac 48494886  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 47508240 - 47508340
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    |||||||||||||| |||||||| ||| ||||||||  ||||| | |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  47508240 ggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 47508339  T
Q  315 a 315  Q
    |    
T  47508340 a 47508340  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 5733165 - 5733223
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 273  Q
    ||||||||||| ||||||| ||| ||| |||| ||||||||||||||| ||||||||||    
T  5733165 ggcggagccacttggggactggggatggccatagcctacccattatttatgagaaatta 5733223  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 12307993 - 12307935
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 273  Q
    ||||||||| | ||||||||||| ||| ||||||||||||||||| || || |||||||    
T  12307993 ggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaatta 12307935  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 4150765 - 4150890
Alignment:
Q  78 ttggatcgtttttggatttgtcgagttactca------actagtttgttcgagtt-ttactttt-agctatagtttttagttaatttaattactttcagc 169  Q
    |||||||||||||||||||| ||||||| |||      ||||||||||||  ||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  4150765 ttggatcgtttttggatttgccgagttagtcattagtaactagtttgttcaggttgttactttttagctatagtttttagttaatttatttactttcagc 4150864  T
Q  170 tatttatactcatttaattttcactt 195  Q
    |||||||||||||| |||||||||||    
T  4150865 tatttatactcattcaattttcactt 4150890  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 11139353 - 11139434
Alignment:
Q  230 ggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccat 311  Q
    |||| ||| ||| ||||||||| |||||||||||  |||||||||||||||||||||  ||||| |||||||||||||||||    
T  11139353 ggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaaccat 11139434  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 92312 - 92412
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||| || || |||||||  | |||||| ||||  |||| | || ||||||||||||||    
T  92312 ggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccatgcc 92411  T
Q  315 a 315  Q
    |    
T  92412 a 92412  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 32635363 - 32635436
Alignment:
Q  253 cccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgccactatcactttt 326  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  32635363 cccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcactttt 32635436  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 37125557 - 37125657
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    ||||||||||| ||||||||| | ||| ||||||||||||||||| || |  |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  37125557 ggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaaccatgcc 37125656  T
Q  315 a 315  Q
    |    
T  37125657 a 37125657  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 11033491 - 11033535
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccatta 259  Q
    |||||||||||||| |||||||||||| ||||||||  |||||||    
T  11033491 ggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 39312538 - 39312638
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    |||||||||||||| ||||| || ||| ||||||||  ||||||| |||   ||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  39312538 ggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtggaaattaccaaaatacccttgggttaaaatgaattttacaaccatgcc 39312637  T
Q  315 a 315  Q
    |    
T  39312638 a 39312638  T

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Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 91565 - 91634
Alignment:
Q  218 ggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttg 287  Q
    ||||||||||| |||||||| ||| |||||||||||||| ||||| || |||||||||| ||||||||||    
T  91565 ggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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Target: scaffold1342 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 1231 - 1289
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 273  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  1231 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 1289  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 4009258 - 4009316
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaatta 273  Q
    ||||||||||| ||||||||||| ||| ||||||||| ||||||||||||| |||||||    
T  4009258 ggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaatta 4009316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 36620266 - 36620177
Alignment:
Q  210 acagcggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaa 299  Q
    |||| |||||||||||||| |||| ||| ||| | ||| ||| ||||||| ||||| ||||||| || ||||||||| || |||| ||||    
T  36620266 acagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 43326105 - 43326202
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 312  Q
    ||||||||||| || |||||||| ||   |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||    
T  43326105 ggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatg 43326202  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 55403338 - 55403438
Alignment:
Q  215 ggcggagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatgcc 314  Q
    ||||||||||| ||||||||| | |||  |||||||||||||||| || || |||||||  | |||||||||||  |||| | || ||||||||||||||    
T  55403338 ggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccatgcc 55403437  T
Q  315 a 315  Q
    |    
T  55403438 a 55403438  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 13627456 - 13627363
Alignment:
Q  219 gagccacgtggggacagggaatgaccatggcctacccattatttttgagaaattatcaaaatacccttgagttaatatgaaatttacaaccatg 312  Q
    |||||||||| |||||||| ||| ||||||||  ||||||| |||  | |||||| |||||||| ||||  |||| ||||| ||||||||||||    
T  13627456 gagccacgtgaggacaggggatggccatggccaccccattaatttgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

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