View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_26 (Length: 390)

Name: NF6277_high_26
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_26
NF6277_high_26
[»] chr5 (3 HSPs)
chr5 (15-321)||(11240676-11240982)
chr5 (15-115)||(22278773-22278873)
chr5 (352-388)||(22292770-22292806)
[»] chr7 (3 HSPs)
chr7 (15-367)||(15746316-15746673)
chr7 (23-115)||(17335488-17335580)
chr7 (247-320)||(44212804-44212877)
[»] chr6 (11 HSPs)
chr6 (15-367)||(1569638-1569995)
chr6 (15-115)||(34957342-34957442)
chr6 (15-120)||(7656626-7656731)
chr6 (145-307)||(7656429-7656593)
chr6 (225-307)||(7673042-7673125)
chr6 (243-317)||(12591338-12591412)
chr6 (15-120)||(7672823-7672928)
chr6 (23-115)||(24026153-24026245)
chr6 (225-286)||(34957173-34957234)
chr6 (354-388)||(629847-629881)
chr6 (354-388)||(24016730-24016764)
[»] chr8 (3 HSPs)
chr8 (35-306)||(129805-130077)
chr8 (247-317)||(45482959-45483028)
chr8 (331-388)||(130081-130138)
[»] chr3 (2 HSPs)
chr3 (15-230)||(11759084-11759299)
chr3 (15-125)||(51847153-51847263)
[»] chr4 (3 HSPs)
chr4 (15-237)||(36230380-36230602)
chr4 (253-306)||(47336086-47336140)
chr4 (15-125)||(26889008-26889118)
[»] chr2 (3 HSPs)
chr2 (15-319)||(18457536-18457837)
chr2 (243-320)||(43881948-43882024)
chr2 (34-128)||(43881752-43881846)
[»] chr1 (2 HSPs)
chr1 (225-309)||(48735011-48735096)
chr1 (15-128)||(48735190-48735302)
[»] scaffold0604 (1 HSPs)
scaffold0604 (253-317)||(7337-7400)
[»] scaffold0268 (1 HSPs)
scaffold0268 (358-388)||(19021-19051)
[»] scaffold0031 (1 HSPs)
scaffold0031 (354-388)||(91272-91306)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 321
Target Start/End: Original strand, 11240676 - 11240982
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11240676 caaacttcaatggaaagtgaaataaaatttaacaatcttgttcaaaaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 11240775  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggaggagagaaagaagactcacgtgagattcaaaatgggggttgatgg 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11240776 tatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaagactcacgtgagattcaaaatgggggttgatgg 11240875  T
Q  215 ttagtaagtttgaattgctactctgcattttc-agttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttccctttt 313  Q
    ||||||||| |||||||||||||||||||| | | ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11240876 ttagtaagtgtgaattgctactctgcatttccaaatttcgggggtgtcttcagcaaaaacaataaaaccaatattttccattataatatgttt-cctttt 11240974  T
Q  314 attaatga 321  Q
    ||||||||    
T  11240975 attaatga 11240982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 22278773 - 22278873
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||| |||||||| ||||||||||||| |||||| ||||| | |||| |||||||||| ||||||  ||||||||| |||| || |||||||||||||    
T  22278773 caaactgcaatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatttaacttaatgtttaggttgatggtgactaacaatttctgaaaa 22278872  T
Q  115 t 115  Q
    |    
T  22278873 t 22278873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 22292770 - 22292806
Alignment:
Q  352 aaaccgccagctgtccttccatgggaaaattgtgcat 388  Q
    |||||||||||||||||||||||||||||||||||||    
T  22292770 aaaccgccagctgtccttccatgggaaaattgtgcat 22292806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 15746316 - 15746673
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15746316 caaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcagtttctgaaaa 15746415  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggaggagaga-------aagaagactcacgtgagattcaaaatggggg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||| ||    
T  15746416 tatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaactaagaagactcacgtgagattcaaaatggagg 15746515  T
Q  208 ttgatggttagtaagtttgaattgctactctgcattttcagttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttc 307  Q
    |||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  15746516 ttgatggttaataagtttgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgtttt 15746614  T
Q  308 ccttttattaatgannnnnnngtcagcaggtaaccccaccccccaaaccgccagctgtcc 367  Q
    ||||||||||||||        ||||||||||| | | ||||| ||||||||||||||||    
T  15746615 ccttttattaatgatttattt-tcagcaggtaatctctcccccaaaaccgccagctgtcc 15746673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 17335580 - 17335488
Alignment:
Q  23 aatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaat 115  Q
    ||||||| ||||||||||||| |||||| ||||| | |||| |||||||||| ||||||  ||||||||| |||| || ||||||||||||||    
T  17335580 aatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatttaacttaatgtttaggttgatggtgactaacaatttctgaaaat 17335488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 44212877 - 44212804
Alignment:
Q  247 agttttgg-gggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttcccttttattaatg 320  Q
    |||||||| |||||| || |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  44212877 agttttggagggtgtatctagcaaaaacaataaaaccaatatttttcattataatatgttt-tcttttattaatg 44212804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 367
Target Start/End: Complemental strand, 1569995 - 1569638
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1569995 caaacttcaatggaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcagtttctgaaaa 1569896  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggaggagagaa-------agaagactcacgtgagattcaaaatggggg 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||| ||    
T  1569895 tatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaactaagaagactcacgtgagattcaaaatggagg 1569796  T
Q  208 ttgatggttagtaagtttgaattgctactctgcattttcagttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttc 307  Q
    |||||||||| |||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  1569795 ttgatggttaataagtttgaattgctgttctgcattttcag-tttgggggtgtttccagcaaaaacaataaaaccaatattttctattataatatgtttt 1569697  T
Q  308 ccttttattaatgannnnnnngtcagcaggtaaccccaccccccaaaccgccagctgtcc 367  Q
    ||||||||||||||        ||||||||||| | | ||||| ||||||||||||||||    
T  1569696 ccttttattaatgatttattt-tcagcaggtaatctctcccccaaaaccgccagctgtcc 1569638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 34957442 - 34957342
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    ||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  34957442 caaacttcaatgaaaagtgaaataaaattgaacaatgctgttaaagaagacgaaatttaagttgatgggtagattgatggtgagtaacaatttctgaaaa 34957343  T
Q  115 t 115  Q
    |    
T  34957342 t 34957342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 7656731 - 7656626
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| ||||||||||| |||| |||||| || || ||||||||||||| |||||||||| ||||||| || ||||||| |||||||||||||    
T  7656731 caaacttcaatggaaagtgaaatataattgaacaatgttattgaagaagatgaaatataagttaatgtgtaggttaatggtgagtaacaatttctgaaaa 7656632  T
Q  115 tatgaa 120  Q
    | ||||    
T  7656631 tctgaa 7656626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 307
Target Start/End: Complemental strand, 7656593 - 7656429
Alignment:
Q  145 ttctttgtgagattcaagtgaaggaggagagaaa-gaagactcacgtgagattcaaaatgggggttgatggttagtaagtttgaattgctactctgcatt 243  Q
    |||| |||||||||||||||||||| ||| |||| | ||| | | ||||||||||  ||| ||| ||| |  | || ||| |||||||||||| ||||||    
T  7656593 ttctatgtgagattcaagtgaaggaagagggaaaaggagaatgaagtgagattcatgatgaggggtgacgtgttgttagtgtgaattgctactttgcatt 7656494  T
Q  244 ttcagttttg-ggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttc 307  Q
    ||||| |||| ||||||| |  ||||||||||||||||||||||||||| |||| ||||||||||    
T  7656493 ttcagatttgaggggtgtattaagcaaaaacaataaaaccaatattttctattaaaatatgtttc 7656429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 7673042 - 7673125
Alignment:
Q  225 tgaattgctactctgcattttcagttttggggg-tgtttccagcaaaaacaataaaaccaatattttccattataatatgtttc 307  Q
    ||||||||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||||||    
T  7673042 tgaattgcttctctgcattttcagatttgggggatgtattcagcaaaaacaataaaaccaatattttctattaaaatatgtttc 7673125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 12591412 - 12591338
Alignment:
Q  243 tttcagttttgggggtgtttccagcaaaaacaataaaacc-aatattttccattataatatgtttcccttttatta 317  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  12591412 tttcacttttgggggtgtatccagcaaaaacaataaaaccaaatatttttcattataatatgttt-ccttttatta 12591338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 7672823 - 7672928
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    ||||| |||||| ||||| ||||| |||| |||||| |  || ||||||||||||| |||||||||| ||||||| || ||||||| |||||||||||||    
T  7672823 caaacatcaatggaaagttaaatataattgaacaatgtcattgaagaagatgaaatataagttaatgtgtaggttaatggtgagtaacaatttctgaaaa 7672922  T
Q  115 tatgaa 120  Q
    | ||||    
T  7672923 tctgaa 7672928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 24026245 - 24026153
Alignment:
Q  23 aatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaat 115  Q
    ||||||| ||||||||||||| |||||| ||||| | |||| |||||||||| ||||||  ||||||||| |||| || ||||||||||||||    
T  24026245 aatgaaatgtgaaataaaattgaacaatgttgttgaggaagctgaaatttaacttaatgtttaggttgatggtgactaacaatttctgaaaat 24026153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 34957234 - 34957173
Alignment:
Q  225 tgaattgctactctgcattttcagttttgggggtgtttccagcaaaaacaataaaaccaata 286  Q
    |||||||||||||||| ||||||| ||||  ||||| | |||||||||||||||||||||||    
T  34957234 tgaattgctactctgctttttcagatttgaaggtgtattcagcaaaaacaataaaaccaata 34957173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 629881 - 629847
Alignment:
Q  354 accgccagctgtccttccatgggaaaattgtgcat 388  Q
    |||||||||||||||||||||| ||||||||||||    
T  629881 accgccagctgtccttccatggaaaaattgtgcat 629847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 24016764 - 24016730
Alignment:
Q  354 accgccagctgtccttccatgggaaaattgtgcat 388  Q
    |||| ||||||||||||||||||||||||||||||    
T  24016764 accgtcagctgtccttccatgggaaaattgtgcat 24016730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 129805 - 130077
Alignment:
Q  35 aataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaatatgaagaaaatggtggtag 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  129805 aataaaatttaacaatcttgttcaagaagatgaaatttaagtttatgggtaggttgatagcgagtatcaatttatgaaaatatgaagaaaatggtggtag 129904  T
Q  135 ataaaaatgattctttgtgagattcaagtgaaggaggagagaaagaagactcacgtgagattcaaaatgggggttgatggttagtaagtttgaattgcta 234  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  129905 atgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaagactcacgtgagattcaaaatgggggttgatggttagtaagtgtgaattgcta 130004  T
Q  235 ctctgcattttcag-ttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgttt 306  Q
    |||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||    
T  130005 ctctgcattttcagattttgggggtgtcaccagcaaaaacaataaaatcaatattttcaattataatatgttt 130077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 45482959 - 45483028
Alignment:
Q  247 agttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttcccttttatta 317  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  45482959 agttttgggggtgtatccagaaaaaacaataaaaccaatatttttcattataatatgttt-ccttttatta 45483028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 130081 - 130138
Alignment:
Q  331 cagcaggtaaccccaccccccaaaccgccagctgtccttccatgggaaaattgtgcat 388  Q
    |||||||||||| || |||| |||| ||||||| ||||||||||||||||||||||||    
T  130081 cagcaggtaacctcatccccaaaactgccagctatccttccatgggaaaattgtgcat 130138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 11759299 - 11759084
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11759299 caaacttcaatggaaagtgaaataaaatttaacaatcttgttcaaaaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 11759200  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggaggagagaaagaagactcacgtgagattcaaaatgggggttgatgg 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  11759199 tatgaagaaaatggtggtagatgaaaatgattctttgtgagattcaagtgaaggaagagagaaagaagactcacgtgagattcaaaatgggggtcgatgg 11759100  T
Q  215 ttagtaagtttgaatt 230  Q
    ||| ||||||||||||    
T  11759099 ttattaagtttgaatt 11759084  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 51847263 - 51847153
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||| | ||| |||||||| ||| |||| | ||||| | ||||| ||| ||||||||||||||||||||| | ||||| ||  ||||||| |||    
T  51847263 caaacttcaaaggaaaatgaaataatattgaacagttttgttgatgaagaagaactttaagttaatgggtaggttgttggtgagaatgcatttctggaaa 51847164  T
Q  115 tatgaagaaaa 125  Q
    | |||||||||    
T  51847163 tctgaagaaaa 51847153  T

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Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 36230380 - 36230602
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  36230380 caaactttaacggaaagtgaaataaaatttaacaatcttgttcaagaagatggaatttaagttaatgggtaggttgatagtgagtatcaatttatgaaaa 36230479  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggaggagagaaagaagactcacgtgagattcaaaatgggggttgatgg 214  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||     
T  36230480 tatgaagaaaatggtggtagatgaaaacgattctttgtgagattcaagtgaaggaagagagaaagaagactcacgtgagattcagaatgggggttgatga 36230579  T
Q  215 ttagtaagtttgaattgctactc 237  Q
     | ||||||||||||| ||||||    
T  36230580 ctggtaagtttgaattactactc 36230602  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 47336140 - 47336086
Alignment:
Q  253 gggggtgtttccagcaaaaacaataaaaccaa-tattttccattataatatgttt 306  Q
    ||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||    
T  47336140 gggggtgtaaccaccaaaaacaataaaaccaaatattttccattataatatgttt 47336086  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 26889008 - 26889118
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||| | ||| |||||||| ||| |||| | ||||| | |||||  || ||||| ||||||||||||||| | ||||| ||  ||||||| |||    
T  26889008 caaacttcaaaggaaaatgaaataatattgaacagttttgttgatgaagaaaaactttaaattaatgggtaggttgttggtgagaatgcatttctggaaa 26889107  T
Q  115 tatgaagaaaa 125  Q
    | |||||||||    
T  26889108 tctgaagaaaa 26889118  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 18457536 - 18457837
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| |||||||||||||||  |||||| ||||| |||||||||||| ||||||||||| | |||||||| ||||||| |||||||||||||    
T  18457536 caaacttcaatggaaagtgaaataaaatggaacaattttgttgaagaagatgaaaattaagttaatgtg-aggttgatggtgagtaacaatttctgaaaa 18457634  T
Q  115 tatgaagaaaatggtggtagataaaaatgattctttgtgagattcaagtgaaggagga-gagaaagaagactcacgtgagattcaaaatgggggttgatg 213  Q
    | |||| || |||| ||   || || ||| |||| |||||||||||||||||||| || || |||| ||| | | ||||||||||| ||| |    || |    
T  18457635 tctgaacaacatggggggcaatgaagatgcttctatgtgagattcaagtgaaggaagaggaaaaaggagattgaagtgagattcaagatgtgcagcgacg 18457734  T
Q  214 gttagtaagtttgaattgctactctgcattttcagttttg-ggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttcccttt 312  Q
        || ||| ||||||||| |||||||||||| | |||| ||||||| | ||||||||||||||||||||||||||  |||||||||||||||  ||||    
T  18457735 ---tgttagtgtgaattgcttctctgcattttcggatttgaggggtgtatacagcaaaaacaataaaaccaatatttctcattataatatgttt-tcttt 18457830  T
Q  313 tattaat 319  Q
    |||||||    
T  18457831 tattaat 18457837  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 43881948 - 43882024
Alignment:
Q  243 tttcagttttgggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttcccttttattaatg 320  Q
    |||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||||    
T  43881948 tttcagttttgggggtgtatccagtaaaagcaatataaccaatattttccattataatatgttt-ccttttattaatg 43882024  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 43881752 - 43881846
Alignment:
Q  34 aaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaatatgaagaaaatgg 128  Q
    |||||||||| || ||  ||||| | |||||| |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  43881752 aaataaaattgaaaaagtttgttgatgaagatcaaatttaagttaatgggtaggttgatggtgagtaaaaatttctgaaaatatgaagaacatgg 43881846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 48735096 - 48735011
Alignment:
Q  225 tgaattgctactctgcattttcagttttgg-gggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttccc 309  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  48735096 tgaattgctactctgcattttcagttttggagggtgtcaccagcaaaaacaataaaaccaatattttccattataatatgtttccc 48735011  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 48735302 - 48735190
Alignment:
Q  15 caaacttcaatgaaaagtgaaataaaatttaacaatcttgttcaagaagatgaaatttaagttaatgggtaggttgatagtgagtatcaatttctgaaaa 114  Q
    |||||||||||| ||| | |||||||||| || | | ||||| | |||||| |||||||||||||||||||||||||| |||||||  |||||||| |||    
T  48735302 caaacttcaatggaaaataaaataaaattgaaaagt-ttgttgatgaagatcaaatttaagttaatgggtaggttgatggtgagtaaaaatttctggaaa 48735204  T
Q  115 tatgaagaaaatgg 128  Q
    ||||||||| ||||    
T  48735203 tatgaagaacatgg 48735190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 7400 - 7337
Alignment:
Q  253 gggggtgtttccagcaaaaacaataaaaccaatattttccattataatatgtttcccttttatta 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7400 gggggtgtatccagcaaaaacaataaaaccaatattttccattataatatgttt-ccttttatta 7337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 358 - 388
Target Start/End: Original strand, 19021 - 19051
Alignment:
Q  358 ccagctgtccttccatgggaaaattgtgcat 388  Q
    |||||||||||||||||||||||||||||||    
T  19021 ccagctgtccttccatgggaaaattgtgcat 19051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 91272 - 91306
Alignment:
Q  354 accgccagctgtccttccatgggaaaattgtgcat 388  Q
    |||| ||||||||||||||||||||||||||||||    
T  91272 accgacagctgtccttccatgggaaaattgtgcat 91306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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