View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6277_high_27 (Length: 388)
Name: NF6277_high_27
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 22073258 - 22073013
Alignment:
| Q |
4 |
atgtcgaagaaaatgtttcagatgcgaatgcagaaagtccagaacctacaattccatgtaccagttcaggttcaacacatgagtcatttcagtccaatat |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22073258 |
atgtcgaaccaaatgtttcagatgcgaatgcagaaagtccagaacctacaattccatgtaccagttcaggttcaacacatgagtcatttgagtccaatat |
22073159 |
T |
|
| Q |
104 |
ctcctctgaatcagacacagatgaggaccttaattccgaggaacacacagattcagatttagattctgaagatgatatagctgaacaaaataaaaatgcc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22073158 |
ctcctctgaatcagacacagatgaggaccttgattccgaggaacacacggattcagattcagattctgaagatgatatagctgaacaaaatacaaatgcc |
22073059 |
T |
|
| Q |
204 |
acaaacatacaagtaggagaacctgcattacaaggtaatataatct |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22073058 |
acaaacatacaagtaggagaacctgcattacaaggtaatataatct |
22073013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 22072871 - 22072785
Alignment:
| Q |
305 |
ttttcatcttttcaaattgtgttggtttatgtttcatatctataaacaa---caaattttctaccaacatatactgtattacacatt |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22072871 |
ttttcatcttttcaaattgtgttggtttatgtttcatatctataaacaacttcaaatttcctaccaacatatactgtattacacatt |
22072785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 22046463 - 22046379
Alignment:
| Q |
307 |
ttcatcttttcaaattgtgttggtttatgtttcatatctataaacaa---caaattttctaccaacatatactgtattacacatt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||||| |||||| |||||| |
|
|
| T |
22046463 |
ttcatcttttcaaattgtgttggtttatgtatcatatctataaacaacttcaaatttcctaccagcatatattgtattgcacatt |
22046379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 22072955 - 22072921
Alignment:
| Q |
257 |
taatttgtttctttatttagtaaaattctaaggat |
291 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22072955 |
taatttgtttctttatttagtaaaattttaaggat |
22072921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University