View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_28 (Length: 381)
Name: NF6277_high_28
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 8456782 - 8456422
Alignment:
| Q |
1 |
tcatcatataatagtatcaaaacagacagaaaaatgtttcaagaaaagtgaaatagacagatgaggcagtaatagcaacatcaacaatattatgtatgat |
100 |
Q |
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| T |
8456782 |
tcatcatataatagtatcaaaacagacagaaaaatgtttcaagaaaagtgaaatagacagatgaggcagtaatagcaacatcaacaatattatgtatgat |
8456683 |
T |
|
| Q |
101 |
tactatggaacaaccttgtcttgaacannnnnnnnnnnnnnnnnnnattatcatattaaggaggtatgacaacatgagaatttacctgaaaaagtatttc |
200 |
Q |
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| T |
8456682 |
tactatggaacaaccttgtcttgaaca---ttcttcttcttcttctattatcatattaaggaggtatgacaacatgagactttacctgaaaaagtatttc |
8456586 |
T |
|
| Q |
201 |
ctttccatctcgcaaaactgcagctggctcttggtgtgaagaaagattgatgacttnnnnnnnnnnnnnnnnggattgatgagaagatgagctgaatagt |
300 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
8456585 |
ctttccatctcgcaaaactgcatctggcccttggtgtgaagaaagattgatgacttaaaaataaaataaaaaggattgatgagaagatgagctcaatagt |
8456486 |
T |
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| Q |
301 |
atatagagtaattgaaatatgatctaaccaataacatttaagcttgatcctagtcaaagatact |
364 |
Q |
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| T |
8456485 |
atatagagtaattgaaatatgatctaaccaataacatttaagcttgatgctagtcaaagatact |
8456422 |
T |
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