View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_32 (Length: 350)

Name: NF6277_high_32
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_32
NF6277_high_32
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-344)||(54372-54692)
[»] chr3 (24 HSPs)
chr3 (19-344)||(9980445-9980765)
chr3 (19-344)||(10034982-10035302)
chr3 (19-344)||(10263680-10264000)
chr3 (19-296)||(9841837-9842109)
chr3 (19-296)||(9852856-9853128)
chr3 (19-344)||(10129901-10130214)
chr3 (19-296)||(10520464-10520736)
chr3 (19-253)||(10430898-10431131)
chr3 (19-249)||(10666514-10666742)
chr3 (19-288)||(10583561-10583829)
chr3 (19-253)||(10360658-10360891)
chr3 (62-238)||(11772256-11772429)
chr3 (59-253)||(10372768-10372961)
chr3 (62-238)||(11778856-11779029)
chr3 (70-249)||(10503681-10503857)
chr3 (276-344)||(10430718-10430786)
chr3 (122-191)||(10092077-10092146)
chr3 (122-191)||(10198959-10199028)
chr3 (127-251)||(10531868-10531989)
chr3 (138-217)||(10086273-10086352)
chr3 (138-217)||(10193193-10193272)
chr3 (127-192)||(10680666-10680731)
chr3 (155-202)||(8585531-8585578)
chr3 (67-104)||(10531808-10531845)
[»] chr4 (1 HSPs)
chr4 (67-217)||(17849815-17849965)
[»] chr2 (1 HSPs)
chr2 (19-201)||(26909867-26910049)
[»] chr8 (1 HSPs)
chr8 (22-217)||(44954552-44954746)


Alignment Details
Target: scaffold0083 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 54692 - 54372
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||   |||      
T  54692 ctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcg 54593  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
     | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || ||||||||||||     
T  54592 atggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatg 54493  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttc 318  Q
    || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  54492 at-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttc 54398  T
Q  319 atatcatctcatgggtcctatgctac 344  Q
    ||||||||||||||||||| ||||||    
T  54397 atatcatctcatgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 9980445 - 9980765
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| |||| |||| | |   ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||   |||      
T  9980445 ctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcg 9980544  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
     | | || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || ||||||||||||     
T  9980545 atggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatg 9980644  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttc 318  Q
    || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  9980645 at-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttc 9980739  T
Q  319 atatcatctcatgggtcctatgctac 344  Q
    ||||||||||||||||||| ||||||    
T  9980740 atatcatctcatgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 10034982 - 10035302
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| ||||  |||||     ||||||||||| |||||||||||||||||||||||| |||||||||||| | ||||   |||||    
T  10034982 ctcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgcattt 10035081  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
      |  || |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | |||||||||||||     
T  10035082 ggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatg 10035181  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttc 318  Q
    || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  10035182 at-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttc 10035276  T
Q  319 atatcatctcatgggtcctatgctac 344  Q
    ||||||||||||||||||| ||||||    
T  10035277 atatcatctcatgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 10263680 - 10264000
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| ||||| |||| || ||||| |||||||||||||||||||||||||||||||||||  ||||||||| | ||| |  ||      
T  10263680 ctcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaaactactcgctatcg 10263779  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
         || |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||||   |||||||| |||||||||||||     
T  10263780 agttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatg 10263879  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttc 318  Q
    || ||| |||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  10263880 at-aga-caagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttc 10263974  T
Q  319 atatcatctcatgggtcctatgctac 344  Q
    ||||||||||||||||||| ||||||    
T  10263975 atatcatctcatgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9841837 - 9842109
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| ||||  |||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||  ||   |||||    
T  9841837 ctcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaacattt 9841936  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
       ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||  || |||||| |||||     
T  9841937 ggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatg 9842036  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 296  Q
    || || |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9842037 at-ag-acaagttgtgttcccgtttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9852856 - 9853128
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||| || |||||||||| |||| ||||||    |||| |||||||||||||||||||||||||||||||||||||||| || |||  ||| | |||||    
T  9852856 ctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctgactcactgaagagactggacattt 9852955  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
     | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| | || |||||||     
T  9852956 atggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagaaataaatgaccaggttacaatatg 9853055  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 296  Q
    || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  9853056 at-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 10129901 - 10130214
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgat-gtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatt 117  Q
    ||||||||||||||||||| |||| | || ||  ||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||||||   ||||    
T  10129901 ctcccttcctcgctgaaatcacttgactt-ttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtgcatt 10129999  T
Q  118 tttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 217  Q
        ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| | |||| ||      || ||||||||    
T  10130000 caaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctttcaaaaatatcaa------aggcacaatat 10130093  T
Q  218 catgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatatttt 317  Q
     || ||| |||||||||||||  ||||||||||| |||  |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||    
T  10130094 gat-aga-caagttgtgttcccatttcaggtatgctcct-agttcctaccagaaa---gccaataatcaatcctctgtacgacacacctcttaatatttt 10130187  T
Q  318 catatcatctcatgggtcctatgctac 344  Q
    |||||||||||||||||||| ||||||    
T  10130188 catatcatctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 10520464 - 10520736
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    |||||||||||||||||||||||| | ||||    |||| |||||||  | |||||||||||||||||||||||||||||||| |||  |||  ||||||    
T  10520464 ctcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctcattt 10520563  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
        |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||  |||||| || ||||||||||||     
T  10520564 gggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcccagtcatatcaataaattaccaagtcacaatatg 10520663  T
Q  219 atgagaacaagttgtgttccagtttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgta 296  Q
    || || ||||||||||||||  ||||||||||||||||||||||||||||||||   |||||||||||||| ||||||    
T  10520664 at-ag-acaagttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 10431131 - 10430898
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| |||| | ||||    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||     
T  10431131 ctcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgagaatta 10431032  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
        |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||     
T  10431031 gggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatg 10430932  T
Q  219 atgagaacaagttgtgttccag-tttcaggtatgtt 253  Q
    || || |||||||||||||||| |||||||||||||    
T  10430931 at-ag-acaagttgtgttccagttttcaggtatgtt 10430898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 10666514 - 10666742
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| |||| ||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||   ||||     
T  10666514 ctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaaggaactgcacattg 10666613  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
        |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || ||||||||||||     
T  10666614 aggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatg 10666713  T
Q  219 atgagaacaagttgtgttccagtttcaggta 249  Q
    || || || ||||||||||| ||||||||||    
T  10666714 at-ag-acgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 10583561 - 10583829
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| |||||||||  |  | |||  ||  || |||||||||||||||||||||||||||||||||||| ||| |||   |||      
T  10583561 ctcccttcctcgctgaaatcacttcaatttgtgggttgtgtaagactcgagtcattaccagaagacagcctccctgactctcttgagcgactgaccatcc 10583660  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
         || |||||||||| |||||||||||||||||| ||| | |||||||||||||||||||||||||||||| | |||||| || ||||||||||||     
T  10583661 aattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatg 10583760  T
Q  219 atgagaacaagttgtgttccag-tttcaggtatgttccacagttcctaccagaaaactgccaataatcaat 288  Q
    || || |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10583761 at-ag-acaagttgtgttcccgttttcaggtatgttccacatttcctaccagaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 10360891 - 10360658
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    ||||||||||||||||||| ||||  ||| | | | ||| |||||||  | |||||||||||||||||||||||||||||||||||| |||| | ||| |    
T  10360891 ctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaactggacatct 10360792  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatc 218  Q
     |   || |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| |||||| | ||||| ||| ||||||||||||     
T  10360791 atgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatg 10360692  T
Q  219 atgagaacaagttgtgttccag-tttcaggtatgtt 253  Q
    || || |||||||||||||| | |||||||||||||    
T  10360691 at-ag-acaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 62 - 238
Target Start/End: Original strand, 11772256 - 11772429
Alignment:
Q  62 agctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaaca 161  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| |||||    
T  11772256 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11772355  T
Q  162 gtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 238  Q
     ||||||||||| |||||||||||||||||| ||||||||||  ||||||||||   ||||||||||| ||||||||    
T  11772356 ttggtccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11772429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 253
Target Start/End: Complemental strand, 10372961 - 10372768
Alignment:
Q  59 aaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaagga 158  Q
    ||||||| |||||||||||||||||||||||||||  |||||| |||  ||| |||||| |  |||| |||||||||| |||||||||||||||||||||    
T  10372961 aaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaagga 10372862  T
Q  159 acagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccag-tttcaggtatgtt 253  Q
    ||| ||||||||||||||||||||||| |||||| | ||||| ||| || ||||||||| || || |||||||||||||| | |||||||||||||    
T  10372861 acattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgat-ag-acaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 11779029 - 11778856
Alignment:
Q  62 agctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaaca 161  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||   |||||   |||| |||||||||| |||||||||||||||||| |||||    
T  11779029 agcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaaca 11778930  T
Q  162 gtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttcc 238  Q
     ||||||||||| |||||||||||||||||| | ||||||||  ||||||||||   ||||||||||| ||||||||    
T  11778929 ttggtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaat---atgagaacaagctgtgttcc 11778856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 70 - 249
Target Start/End: Original strand, 10503681 - 10503857
Alignment:
Q  70 tcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtcca 169  Q
    |||||||||||||||||||| ||||| |||||||||| |||  |||||   ||||| |||   |||| |||||||||||||||||||||||| |||||||    
T  10503681 tcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaaggaaggaacattggtcca 10503780  T
Q  170 aaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaacaagttgtgttccagtttcaggta 249  Q
    ||||| ||||||||||||||||| | ||| |||   ||||||||||   ||||| ||| | |||||||| ||||||||||    
T  10503781 aaatttctcacatccctgtcatagaaatagatggacaagtcacaat---atgaggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  276 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 10092077 - 10092146
Alignment:
Q  122 gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 191  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10092077 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 10198959 - 10199028
Alignment:
Q  122 gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcat 191  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  10198959 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 10531868 - 10531989
Alignment:
Q  127 ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatatcatgagaac 226  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||| |||||||||||||||||   |||||  |  |||| |||||   ||||  ||    
T  10531868 ccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaat---atgaagac 10531964  T
Q  227 aagttgtgttccagtttcaggtatg 251  Q
    |||||||||||| ||||||||||||    
T  10531965 aagttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 10086273 - 10086352
Alignment:
Q  138 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 217  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10086273 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 10193193 - 10193272
Alignment:
Q  138 agaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 217  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| | ||||||| |||| |||||||||    
T  10193193 agaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatat 10193272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 10680666 - 10680731
Alignment:
Q  127 ccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcata 192  Q
    |||||||||| |||||||||||||||||| |||||  ||||||||||| |||||||||||||||||    
T  10680666 ccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata 10680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 8585578 - 8585531
Alignment:
Q  155 aggaacagtggtccaaaattgctcacatccctgtcatatatataaatg 202  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaatg 8585531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 10531808 - 10531845
Alignment:
Q  67 gagtcattaccagaagacagcctccctgactctcttaa 104  Q
    |||||||||||||||||||||||||||  |||||||||    
T  10531808 gagtcattaccagaagacagcctcccttcctctcttaa 10531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 17849965 - 17849815
Alignment:
Q  67 gagtcattaccagaagacagcctccctgactctcttaagcaactagtcatttttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggt 166  Q
    ||||| |||||||||||||||||||||  ||||||||||| ||| |||||||   |||| ||  | |||| |||||||||||||||| ||||||| ||||    
T  17849965 gagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggt 17849866  T
Q  167 ccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 217  Q
    |||||||||||||||||||||||||| | ||  | ||| ||||||||||||    
T  17849865 ccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatat 17849815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 26909867 - 26910049
Alignment:
Q  19 ctcccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattt 118  Q
    |||||||||||||||||||  |||||||| | | | ||| | || || |||||||||||||||||||||||||| ||||||||| ||   || |  || |    
T  26909867 ctcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctcttgagatgctggaaatgt 26909966  T
Q  119 ttagatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaat 201  Q
         || |||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26909967 catcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 44954746 - 44954552
Alignment:
Q  22 ccttcctcgctgaaattacttcaattgtttcgatgtaaaaagctagagtcattaccagaagacagcctccctgactctcttaagcaactagtcattttta 121  Q
    |||||||||||||||| ||||||||| ||    ||| || | || ||||| ||||||||||| ||||||||  |||||||||| | ||| |||||||       
T  44954746 ccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccccaactctcttaatcgactggtcatttggc 44954648  T
Q  122 gatgtccattgttagtagaaaggtataaaaggaaggaacagtggtccaaaattgctcacatccctgtcatatatataaatgacgaagtcacaatat 217  Q
    |||| ||  | | || ||||||||||| |||||||||||| ||||||||||||||| | || | ||||||| | ||| ||| | ||||||||||||    
T  44954647 gatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatat 44954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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