View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_39 (Length: 335)
Name: NF6277_high_39
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 35363939 - 35364259
Alignment:
| Q |
1 |
aaaaatcagagaaataattagatgggagagaga--tcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
98 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35363939 |
aaaaatcagagaaataattagatgggagagagagatcaatacatccaatccaaaatcaatgaatattacgatgaatgccgatctagatcatcaacgatca |
35364038 |
T |
|
| Q |
99 |
tgacaatcaccttccaatgannnnnnn-gaaatccctctaattgcttttatggattgaacattcaccttctgtcactgtcttcgctccctctgattcata |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35364039 |
tgacaatcaccttccaatgattttttttgaaatccctctaattgcttttatgtattgaacattcaccttctgtcactgtcttcactccctctgattcata |
35364138 |
T |
|
| Q |
198 |
atggaaggaaaaattataggaacacgttcaacaaacaccaatcttttgttatccctcattaaatcattcattgatcacaatgtataaccatgcatttaat |
297 |
Q |
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|||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35364139 |
atgggaggaaaaactataggaacacgttcaacaaacactaatcttttgttatccctcattaaatcagtcattgatcacaatgtataaccatgcatttaat |
35364238 |
T |
|
| Q |
298 |
gatagcaaggacgggaaatct |
318 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35364239 |
gatagcaaggacgggaaatct |
35364259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 57 - 169
Target Start/End: Complemental strand, 32662747 - 32662635
Alignment:
| Q |
57 |
atgaatattacgatgaataccgatctagatcatcaacgatcatgacaatcaccttccaatgannnnnnngaaatccctctaattgcttttatggattgaa |
156 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||| |||||||||||||| |||||||| |
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| T |
32662747 |
atgaatattatgatgaataccgatctagatcagcaacgatcatgacaatcaccttctagtgaatgttttgaaatctatctaattgcttttacggattgaa |
32662648 |
T |
|
| Q |
157 |
cattcaccttctg |
169 |
Q |
| |
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||||||||||||| |
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| T |
32662647 |
cattcaccttctg |
32662635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 32656147 - 32656111
Alignment:
| Q |
134 |
tctaattgctttt-atggattgaacattcaccttctg |
169 |
Q |
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| T |
32656147 |
tctaattgctttttatggattgaacattcaccttctg |
32656111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21786831 - 21786651
Alignment:
| Q |
1 |
aaaaatcagagaaataattagatggga--gagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
98 |
Q |
| |
|
|||||||||| | ||||||||||| || |||||| | ||||||| ||||||| |||||||||||| || ||||||| |||||||||||||||||||| |
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| T |
21786831 |
aaaaatcagaaacataattagatgagatagagagaccgatacatcgaatccaac--caatgaatattatgaagaatacctatctagatcatcaacgatca |
21786734 |
T |
|
| Q |
99 |
tgacaatcaccttccaatgannnnnnngaaatccctctaattgcttttatggattgaacattcaccttctgtcactgtcttcg |
181 |
Q |
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||||||||||||||| ||| |||||||||||||||||| ||| ||||||| | ||||| || | ||||||||||| |
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| T |
21786733 |
tgacaatcaccttccggtgaatttttaaaaatccctctaattgcttgtatcgattgaataatcaccctccgccactgtcttcg |
21786651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38682136 - 38682039
Alignment:
| Q |
1 |
aaaaatcagagaaataattagatggga--gagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
98 |
Q |
| |
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|||||||||| | ||||||||||| || |||||| | |||||| |||||||| |||||||||||| || ||||||| ||||||||||| |||||||| |
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| T |
38682136 |
aaaaatcagaaacataattagatgagatagagagaccgatacattcaatccaac--caatgaatattatgaagaatacctatctagatcataaacgatca |
38682039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38683389 - 38683292
Alignment:
| Q |
1 |
aaaaatcagagaaataattagatggga--gagagatcaatacatccaatccaaaatcaatgaatattacgatgaataccgatctagatcatcaacgatca |
98 |
Q |
| |
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|||||||||| | ||||||||||| || |||||| | |||||| |||||||| |||||||||||| || ||||||| ||||||||||| |||||||| |
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| T |
38683389 |
aaaaatcagaaacataattagatgagatagagagaccgatacattcaatccaac--caatgaatattatgaagaatacctatctagatcataaacgatca |
38683292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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