View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_4 (Length: 618)
Name: NF6277_high_4
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 20 - 614
Target Start/End: Original strand, 14544777 - 14545367
Alignment:
| Q |
20 |
ctaatatcatgaaagctaaaattgcttctcatccttattatcctcgccttcttcaagcctatatcgattgtcaaaaggtaaa-ttaaactaagtttgatc |
118 |
Q |
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| T |
14544777 |
ctaatatcatgaaagctaaaattgcttctcatccttattaccctcgccttcttcaagcctatatcgattgtcaaaaggtaaaattaaactaagtctgatc |
14544876 |
T |
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| Q |
119 |
gtaactactctgcaacgtgacggtcttaatctagtttaacgaatttctgcaattgctaataaattgtttaggttggtgctcctcctgaaattgcaagttt |
218 |
Q |
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| T |
14544877 |
gtaactactctgcaacgtgacggtcttaatccagtttaacgaatttctataattgctaataaattgtttaggttggtgctcctcctgaaattgcaagttt |
14544976 |
T |
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| Q |
219 |
attggaagagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggt-ccc |
317 |
Q |
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| T |
14544977 |
attggaggagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggtcccc |
14545076 |
T |
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| Q |
318 |
cccttaaatcctttctttctttctttgtttcgctcgcacgaacacaaaaatatattta-nnnnnnnattttattgaaaataaataaattaaatgcaactt |
416 |
Q |
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| T |
14545077 |
cccttaaatc----ctttctttctttgtttcgcttgcacgaacacaaaaatatttatattttttttattttattgaaaataaataaattaaatgcaactt |
14545172 |
T |
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| Q |
417 |
tattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctaaaacgtttc |
516 |
Q |
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| T |
14545173 |
tattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctacaacgtttc |
14545272 |
T |
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| Q |
517 |
tgaacaagatcgaaactcaactcagtcatctctgcactggtggtggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctctctc |
614 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545273 |
tgaacaagatcgaaactcaactcagtcatctctgcac---tggtggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctctctc |
14545367 |
T |
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