View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_40 (Length: 333)

Name: NF6277_high_40
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_40
NF6277_high_40
[»] chr2 (3 HSPs)
chr2 (1-323)||(5101348-5101670)
chr2 (1-323)||(5118907-5119229)
chr2 (1-310)||(5080304-5080616)
[»] chr6 (1 HSPs)
chr6 (1-315)||(14412615-14412929)
[»] chr3 (1 HSPs)
chr3 (4-271)||(16885678-16885948)
[»] scaffold0070 (2 HSPs)
scaffold0070 (76-226)||(16325-16475)
scaffold0070 (97-200)||(49869-49972)
[»] chr8 (16 HSPs)
chr8 (76-226)||(25695989-25696139)
chr8 (66-200)||(25715812-25715946)
chr8 (31-216)||(23258776-23258961)
chr8 (31-200)||(25647596-25647765)
chr8 (31-226)||(25323240-25323435)
chr8 (77-226)||(25476291-25476440)
chr8 (31-200)||(25800862-25801031)
chr8 (76-200)||(25311628-25311752)
chr8 (76-200)||(25341609-25341733)
chr8 (31-200)||(25453566-25453735)
chr8 (31-176)||(25686234-25686379)
chr8 (76-210)||(25605266-25605400)
chr8 (78-226)||(22900091-22900239)
chr8 (73-200)||(24874764-24874891)
chr8 (73-200)||(25570512-25570639)
chr8 (31-140)||(24912451-24912560)
[»] scaffold0830 (1 HSPs)
scaffold0830 (31-216)||(3821-4006)
[»] chr4 (1 HSPs)
chr4 (66-221)||(10324466-10324621)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 5101670 - 5101348
Alignment:
Q  1 aagcttcttgatgctgcttccattgtcaagtcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccacccc 100  Q
    ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  5101670 aagcttcttgatgcttctgccattgtcaagtcaagtactttaattgctatcatcttcccactagaaagcattccttgatacacggatccaaagccacccc 5101571  T
Q  101 ttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  5101570 ttccaagtaaattactctcactgaatccattagttgcttgcactagttcataataggaaatcctttttggaactcctatagtgtgtaaacccctttcaag 5101471  T
Q  201 tggattttcaacatttctccttttatgaatctgaagtattatggatgcaacaaccaaaatgcctaacacaacaattatggatgatatgcatatgattgat 300  Q
    || ||||| | | |||||||||||||| ||  ||||||||||| |||||||||||||||| | || |||||||||||||||||||||  |||||||| ||    
T  5101470 tgaatttttaccctttctccttttatgcattcgaagtattatgcatgcaacaaccaaaatacatagcacaacaattatggatgatatcaatatgattaat 5101371  T
Q  301 agcatctttgactttttcctatg 323  Q
    | |||||||||||||||||||||    
T  5101370 aacatctttgactttttcctatg 5101348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 5119229 - 5118907
Alignment:
Q  1 aagcttcttgatgctgcttccattgtcaagtcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccacccc 100  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| ||||| |    
T  5119229 aagcttcttgatgcttctgccattgtcaagtcaagtactttaattgctatcatcttcccactagaaagcattccattatacacggatccaaaaccacctc 5119130  T
Q  101 ttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| || |||||||| ||| |||||    
T  5119129 ttccaagtaaattactgtcactgaatccattagttgcttgcacaagttcataataggaaatccttcttggaactcctagagcggataaactcctctcaag 5119030  T
Q  201 tggattttcaacatttctccttttatgaatctgaagtattatggatgcaacaaccaaaatgcctaacacaacaattatggatgatatgcatatgattgat 300  Q
    |||| | ||||| ||| |||||||||| ||  ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||  |||||||| ||    
T  5119029 tggactgtcaacctttttccttttatgcattcgaagtattatgcatgcaacaaccaaaatgcctagcacagcaattatggatgatatcaatatgattaat 5118930  T
Q  301 agcatctttgactttttcctatg 323  Q
    | ||||||||| |||||||||||    
T  5118929 aacatctttgattttttcctatg 5118907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 5080304 - 5080616
Alignment:
Q  1 aagcttcttgatgctgcttccattgtcaagtcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccacccc 100  Q
    |||||| ||| || |||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||     
T  5080304 aagctttttgttgttgcttccaatttcaagtcaagtactttaattgctaccatcttcccactagaaagcattccttgatacacagatccaaagccaccct 5080403  T
Q  101 ttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactccta---tagtggataaacccctttc 197  Q
    |||| ||||| ||| ||||||| ||||||||||||||||| || |||||| |||||||||||||||||  ||  ||||   | || |||||| |  ||||    
T  5080404 ttcctagtaaattagtctcactaaatccattagttgcttgcacaagttcagaataggaaatcctttttaaaagccctaaatttgttgataaatctttttc 5080503  T
Q  198 aagtggattttcaacatttctccttttatgaatctgaagtattatggatgcaacaaccaaaatgcctaacacaacaattatggatgatatgcatatgatt 297  Q
    ||||||||||||||| | | || |||| || || ||||||| |||| |||||| | |||||||||| ||||||||||||||||||||||||||||  |||    
T  5080504 aagtggattttcaacttctttctttttgtgcatttgaagtactatgcatgcaatagccaaaatgcccaacacaacaattatggatgatatgcatacaatt 5080603  T
Q  298 gatagcatctttg 310  Q
     ||| ||||||||    
T  5080604 aataacatctttg 5080616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 14412615 - 14412929
Alignment:
Q  1 aagcttcttgatgctgcttccattgtcaagtcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccacccc 100  Q
    ||||||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |||||||    
T  14412615 aagcttcttgaagtagcttccattgttaagtcaagtactttaactgctatcatcttcccaatagaaagcattcctttatacactgatccaaaaccacccc 14412714  T
Q  101 ttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |    
T  14412715 ttccaagtaaattagtctcgctgaatccattagttgcttggacgagttcataataggaaatccttattggaactcctacagtggataaacccctttcacg 14412814  T
Q  201 tggattttcaacatttctccttttatgaatctgaagtattatggatgcaacaaccaaaatgcctaacacaacaattatggatgatatgcatatgattgat 300  Q
    |||| ||||||| ||| |||||||||| || ||||| ||| |  |||||||||  | |||||| |||||| ||||||||  ||||||| |||||||| ||    
T  14412815 tggactttcaacctttttccttttatgcatttgaagcattgtacatgcaacaataataatgcccaacacagcaattatgagtgatatggatatgattaat 14412914  T
Q  301 agcatctttgacttt 315  Q
    |||||||||| ||||    
T  14412915 agcatctttgtcttt 14412929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 16885948 - 16885678
Alignment:
Q  4 cttcttgatgctgcttccattgtcaagtcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttc 103  Q
    |||||||||| |||||||||  |||||||||||||||||| ||||| |||||||||  ||||||||||||| ||||||||||| || || || ||| |||    
T  16885948 cttcttgatgttgcttccatattcaagtcaagtactttaattgctaccatcttcccggtagaaagcattccctgatacacagagccgaagcccccctttc 16885849  T
Q  104 caagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactccta---tagtggataaacccctttcaag 200  Q
    ||||||| |||||||| || ||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||    ||| ||||||||| |||||||    
T  16885848 caagtaagttactctcgctaaatccattagttgcttgcacaagttcataatatgaaatccttcttggaacccctaaatcagttgataaacccatttcaag 16885749  T
Q  201 tggattttcaacatttctccttttatgaatctgaagtattatggatgcaacaaccaaaatgcctaacacaa 271  Q
    |||||||||||| ||| || ||||||| ||  |||| |||||| ||   |||||||||||| ||| |||||    
T  16885748 tggattttcaacttttttctttttatgcattagaagaattatgcataggacaaccaaaatggctatcacaa 16885678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 226
Target Start/End: Complemental strand, 16475 - 16325
Alignment:
Q  76 tgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactc 175  Q
    ||||| ||||| |||||||| || |||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||| || ||| ||||| |||    
T  16475 tgataaacagagccaaatcccccacttccaaggaaattactctcattgaatccattagttgcttgcacaagttcataataggatattcttcttggagctc 16376  T
Q  176 ctatagtggataaacccctttcaagtggattttcaacatttctccttttat 226  Q
    ||| ||| || |||||||||||||| | |||||||   |||||||||||||    
T  16375 ctagagttgacaaacccctttcaagagtattttcattctttctccttttat 16325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 49972 - 49869
Alignment:
Q  97 ccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaaccccttt 196  Q
    |||| ||||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||||| ||| || || |||||| ||| |||||||||||||    
T  49972 ccccgtccaagtaaattacactcactaaatccattagttgcttgcacaagttcataataggaaattcttcttagagctcctaaagttgataaaccccttt 49873  T
Q  197 caag 200  Q
    ||||    
T  49872 caag 49869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 25695989 - 25696139
Alignment:
Q  76 tgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactc 175  Q
    ||||| ||||| |||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||| || ||| ||||| |||    
T  25695989 tgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccattagttgcttgcacaagttcataataggatattcttcttggagctc 25696088  T
Q  176 ctatagtggataaacccctttcaagtggattttcaacatttctccttttat 226  Q
    | | ||| || |||||||||||||| | |||||||   |||||||||||||    
T  25696089 ccaaagttgacaaacccctttcaagagtattttcattctttctccttttat 25696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 25715812 - 25715946
Alignment:
Q  66 aagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctt 165  Q
    |||| |||||||||| ||||| |||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || | |||||||||||| || |||    
T  25715812 aagctttccttgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccattagttgcttgcacaatttcataataggatattctt 25715911  T
Q  166 tttggaactcctatagtggataaacccctttcaag 200  Q
     ||||| |||||| ||| || ||||||||||||||    
T  25715912 cttggagctcctaaagttgaaaaacccctttcaag 25715946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 216
Target Start/End: Original strand, 23258776 - 23258961
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  || |||| | |||||||||||||| ||||| || ||| |||||||||| || |||||| |||||||||    
T  23258776 tcaaatactttaactgcaatcatctcaccatcaggaagcttcccttgatacacagagccaaagccccccgttccaagtaaattgctctcattgaatccat 23258875  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaagtggattttcaacattt 216  Q
    | |||||||| || ||||||||||| || || ||| ||||||||||||  || ||||||||||||||||    |||||||||||||    
T  23258876 ttgttgcttgcacaagttcataatatgatattcttcttggaactcctaaggttgataaacccctttcaacaatattttcaacattt 23258961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 25647596 - 25647765
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  |  |||| | || ||||| |||||||||||| | ||||||||||| || ||||||||| |||||||||    
T  25647596 tcaattactttaactgcaatcatctcaccatcaagaagcttcccctgataaacagatccaaatgctccccttccaaggaaattactctcattgaatccat 25647695  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| || |||||||||||||| || ||| ||||| |||||| ||| || ||||||||||||||    
T  25647696 tagttgcttgcacaagttcataataggatattcttcttggagctcctaaagttgacaaacccctttcaag 25647765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 31 - 226
Target Start/End: Original strand, 25323240 - 25323435
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  |  |||| |||| ||||| ||||| |||||||| ||||||||||| || ||||||||| | |||||||    
T  25323240 tcaattactttaactgcaatcatctcaccatcaagaagctttccctgataaacagagccaaatcccccccttccaaggaaattactctcatttaatccat 25323339  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaagtggattttcaacatttctccttttat 226  Q
    |||||||||| |  ||||||||||| || || ||| ||||| |||||| ||| || |||||||||||||| | |||||||   |||||||||||||    
T  25323340 tagttgcttgcaaaagttcataatatgatattcttcttggagctcctaaagttgacaaacccctttcaagagtattttcattctttctccttttat 25323435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 25476291 - 25476440
Alignment:
Q  77 gatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcc 176  Q
    |||| ||||| ||||| || |||| ||||||||| |||| |||| ||||||||||||||||||| || ||||||||||||||||| ||| || || ||||    
T  25476291 gatatacagagccaaagcccccccgtccaagtaaattacactcattgaatccattagttgcttgcacaagttcataataggaaattcttcttagagctcc 25476390  T
Q  177 tatagtggataaacccctttcaagtggattttcaacatttctccttttat 226  Q
    || ||| ||||||||||||||||| | ||||| ||  ||| |||||||||    
T  25476391 taaagttgataaacccctttcaagagtattttgaatctttttccttttat 25476440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 25800862 - 25801031
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||| ||||| |||||||  |||  || |||| | || ||||| ||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  25800862 tcaattactttgactgcaatcatctcaccatcaggaagcttcccctgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccat 25800961  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| || ||||||||||| || || ||| ||||| |||||| ||| || ||||||||||||||    
T  25800962 tagttgcttgcacaagttcataatacgatattcttcttggagctcctaaagttgacaaacccctttcaag 25801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 25311628 - 25311752
Alignment:
Q  76 tgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactc 175  Q
    ||||| ||||| |||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || | |||||||||||| || ||| ||||| |||    
T  25311628 tgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccattagttgcttgcacaatttcataataggatattcttcttggagctc 25311727  T
Q  176 ctatagtggataaacccctttcaag 200  Q
    | | ||| || ||||||||||||||    
T  25311728 ccaaagttgacaaacccctttcaag 25311752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 25341609 - 25341733
Alignment:
Q  76 tgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactc 175  Q
    ||||| ||||| |||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || | |||||||||||| || ||| ||||| |||    
T  25341609 tgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccattagttgcttgcacaatttcataataggatattcttcttggagctc 25341708  T
Q  176 ctatagtggataaacccctttcaag 200  Q
    | | ||| || ||||||||||||||    
T  25341709 ccaaagttgacaaacccctttcaag 25341733  T

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Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 25453566 - 25453735
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  |  |||| | || ||||| ||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  25453566 tcaattactttaactgcaatcatctcaccatcaagaagcttcccctgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccat 25453665  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaag 200  Q
    |||||||||| |  |||||||||||||| || ||| |||||  ||| | ||| || ||||||||||||||    
T  25453666 tagttgcttgcaaaagttcataataggatattcttcttggagttcccaaagttgacaaacccctttcaag 25453735  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 25686234 - 25686379
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  |  |||| | || ||||| ||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  25686234 tcaattactttaactgcaatcatctcaccatcaagaagcttcccatgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccat 25686333  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcc 176  Q
    |||||||||| || |||||||||||||| || ||| ||||| ||||    
T  25686334 tagttgcttgaacaagttcataataggatattcttcttggagctcc 25686379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 25605266 - 25605400
Alignment:
Q  76 tgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactc 175  Q
    ||||| |||||||||||| | ||||||||||| || ||||||||| |||||||||| |||||||| || ||||||||||| || || ||| ||||| |||    
T  25605266 tgataaacagatccaaatgctccccttccaaggaaattactctcattgaatccatttgttgcttgcacaagttcataatatgatattcttcttggagctc 25605365  T
Q  176 ctatagtggataaacccctttcaagtggattttca 210  Q
    | | ||| || ||||||||| |||| | |||||||    
T  25605366 ccaaagttgacaaaccccttccaagagtattttca 25605400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 22900239 - 22900091
Alignment:
Q  78 atacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaactcct 177  Q
    ||||||||| |||||||| ||||||||||| || ||||||||| | |||||||| |||||||| || || |||||||| ||||| ||| ||||| ||||     
T  22900239 atacacagacccaaatcctccccttccaagcaaattactctcattaaatccatttgttgcttgcacaagctcataataagaaattcttcttggagctcca 22900140  T
Q  178 atagtggataaacccctttcaagtggattttcaacatttctccttttat 226  Q
    | ||| ||||||   |||||||| | |||||||||  || |||||||||    
T  22900139 agagttgataaatttctttcaagagtattttcaaccattttccttttat 22900091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 24874891 - 24874764
Alignment:
Q  73 ccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaa 172  Q
    |||||||||||||| ||||| |  ||||||||||||||||| |||||| |||||||||| |||||||  |  ||||||||||| || || ||| || ||     
T  24874891 ccttgatacacagagccaaagctcccccttccaagtaattttctctcattgaatccatttgttgcttacaaaagttcataatatgatattcttcttagag 24874792  T
Q  173 ctcctatagtggataaacccctttcaag 200  Q
    |||||| ||  |||||||||||||||||    
T  24874791 ctcctaaagctgataaacccctttcaag 24874764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 25570512 - 25570639
Alignment:
Q  73 ccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctttttggaa 172  Q
    |||||||||||||| ||||| |  ||||||||||||||||| |||||| |||||||||| |||||||  |  ||||||||||| || || ||| || ||     
T  25570512 ccttgatacacagagccaaagctcccccttccaagtaattttctctcattgaatccatttgttgctttcaaaagttcataatatgatattcttcttagag 25570611  T
Q  173 ctcctatagtggataaacccctttcaag 200  Q
    |||||| ||  |||||||||||||||||    
T  25570612 ctcctaaagctgataaacccctttcaag 25570639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 24912560 - 24912451
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  |||  |  |||| | || ||||| ||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  24912560 tcaattactttaactgcaatcatctcaccatcaagaagcttcccatgataaacagagccaaatcccccccttccaaggaaattactctcattgaatccat 24912461  T
Q  131 tagttgcttg 140  Q
    ||||||||||    
T  24912460 tagttgcttg 24912451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 4006 - 3821
Alignment:
Q  31 tcaagtactttaactgctatcatcttcccactagaaagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccat 130  Q
    |||| |||||||||||| |||||||  ||| ||| |||| | || | ||||||||| ||||| |  ||||||||||||||||| |||||   ||||||||    
T  4006 tcaattactttaactgcaatcatctcaccattaggaagcttcccctcatacacagaaccaaagctcccccttccaagtaatttgctctcttcgaatccat 3907  T
Q  131 tagttgcttggacgagttcataataggaaatcctttttggaactcctatagtggataaacccctttcaagtggattttcaacattt 216  Q
    | |||||||  || ||||||||||| || || ||| ||||| ||||||  |  ||||||||||||||||  | |||||||||||||    
T  3906 ttgttgcttccacaagttcataatatgatattcttcttggagctcctaatgctgataaacccctttcaaaagtattttcaacattt 3821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 10324466 - 10324621
Alignment:
Q  66 aagcattccttgatacacagatccaaatccaccccttccaagtaatttactctcactgaatccattagttgcttggacgagttcataataggaaatcctt 165  Q
    |||||| || ||||||||||| ||||| |  |||||||||||||||||||||||| |||| ||||| |||||||  || ||||||||||| || || |||    
T  10324466 aagcatcccctgatacacagagccaaagctcccccttccaagtaatttactctcattgaaaccatttgttgcttccacaagttcataatatgatattctt 10324565  T
Q  166 tttggaactcctatagtggataaacccctttcaagtggattttcaacatttctcct 221  Q
     ||| | |||||| |   |||||  |||||||||| | ||||||||| ||| ||||    
T  10324566 cttgtagctcctaaaactgataattccctttcaagagtattttcaacgtttttcct 10324621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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