View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_50 (Length: 283)

Name: NF6277_high_50
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_50
NF6277_high_50
[»] chr5 (18 HSPs)
chr5 (1-271)||(4555576-4555846)
chr5 (15-194)||(9877627-9877806)
chr5 (15-194)||(39903782-39903961)
chr5 (15-194)||(39908895-39909074)
chr5 (15-194)||(9872512-9872691)
chr5 (15-193)||(2022901-2023079)
chr5 (20-194)||(13556393-13556567)
chr5 (20-184)||(35368989-35369153)
chr5 (15-132)||(43378374-43378491)
chr5 (15-172)||(25184035-25184186)
chr5 (113-184)||(43540857-43540928)
chr5 (197-255)||(35368895-35368953)
chr5 (197-257)||(13556296-13556356)
chr5 (197-256)||(9872417-9872476)
chr5 (197-256)||(9877532-9877591)
chr5 (197-256)||(39909110-39909169)
chr5 (197-257)||(2023106-2023166)
chr5 (197-256)||(39903997-39904056)
[»] chr3 (41 HSPs)
chr3 (19-265)||(20891000-20891247)
chr3 (15-194)||(31081595-31081774)
chr3 (38-256)||(18024173-18024392)
chr3 (15-194)||(31076490-31076669)
chr3 (6-194)||(6858143-6858331)
chr3 (15-194)||(1302333-1302512)
chr3 (15-194)||(4049744-4049923)
chr3 (15-194)||(10673026-10673205)
chr3 (15-194)||(10678141-10678320)
chr3 (15-194)||(8458248-8458427)
chr3 (15-194)||(8464687-8464866)
chr3 (15-194)||(10591383-10591562)
chr3 (15-194)||(33702688-33702867)
chr3 (15-194)||(33703236-33703415)
chr3 (15-192)||(5458102-5458279)
chr3 (15-192)||(5481578-5481755)
chr3 (15-194)||(6853040-6853219)
chr3 (15-194)||(4054878-4055057)
chr3 (26-221)||(3187514-3187710)
chr3 (78-194)||(10584946-10585062)
chr3 (25-193)||(49784443-49784611)
chr3 (15-184)||(29827366-29827530)
chr3 (197-256)||(4049960-4050019)
chr3 (197-256)||(10584851-10584910)
chr3 (197-255)||(49784638-49784696)
chr3 (197-256)||(1302237-1302296)
chr3 (197-256)||(4055094-4055153)
chr3 (197-256)||(5458004-5458063)
chr3 (197-256)||(5481481-5481540)
chr3 (197-256)||(6852945-6853004)
chr3 (197-256)||(6858048-6858107)
chr3 (197-256)||(8464902-8464961)
chr3 (197-256)||(10591288-10591347)
chr3 (197-256)||(10672931-10672990)
chr3 (197-256)||(33702592-33702651)
chr3 (197-251)||(33703452-33703506)
chr3 (203-256)||(8458470-8458523)
chr3 (197-256)||(31076395-31076454)
chr3 (197-256)||(31081500-31081559)
chr3 (197-232)||(10678070-10678105)
chr3 (197-260)||(29827556-29827618)
[»] chr8 (20 HSPs)
chr8 (15-194)||(14314999-14315178)
chr8 (15-194)||(14318703-14318882)
chr8 (15-194)||(26981964-26982143)
chr8 (15-194)||(26987077-26987256)
chr8 (15-192)||(34108166-34108343)
chr8 (15-184)||(18608726-18608895)
chr8 (63-194)||(18494264-18494395)
chr8 (15-193)||(10341046-10341224)
chr8 (25-194)||(43956937-43957106)
chr8 (25-193)||(25953248-25953416)
chr8 (29-150)||(18885015-18885136)
chr8 (197-256)||(14314904-14314963)
chr8 (197-256)||(14318608-14318667)
chr8 (197-256)||(18494169-18494228)
chr8 (197-256)||(26986982-26987041)
chr8 (197-256)||(34108383-34108442)
chr8 (197-251)||(43956848-43956902)
chr8 (197-256)||(26981868-26981927)
chr8 (116-178)||(1781877-1781939)
chr8 (213-257)||(25953167-25953211)
[»] chr7 (23 HSPs)
chr7 (15-194)||(12856726-12856905)
chr7 (15-194)||(26050958-26051137)
chr7 (15-194)||(26056071-26056250)
chr7 (15-194)||(26060317-26060496)
chr7 (15-194)||(26065430-26065609)
chr7 (15-194)||(12851611-12851790)
chr7 (15-194)||(14610301-14610480)
chr7 (15-255)||(37459857-37460108)
chr7 (15-173)||(11056562-11056720)
chr7 (15-256)||(4181396-4181648)
chr7 (15-151)||(35352422-35352558)
chr7 (20-120)||(5436692-5436792)
chr7 (78-182)||(5440388-5440492)
chr7 (78-182)||(5449398-5449502)
chr7 (197-256)||(12856941-12857000)
chr7 (184-257)||(5440292-5440365)
chr7 (184-257)||(5449302-5449375)
chr7 (197-256)||(12851828-12851887)
chr7 (197-256)||(26051173-26051232)
chr7 (197-256)||(26056286-26056345)
chr7 (197-256)||(26060532-26060591)
chr7 (197-256)||(26065645-26065704)
chr7 (183-234)||(35352336-35352387)
[»] chr6 (12 HSPs)
chr6 (15-194)||(21275710-21275889)
chr6 (25-260)||(24508849-24509085)
chr6 (15-193)||(20752207-20752385)
chr6 (25-193)||(24509650-24509818)
chr6 (15-184)||(11183264-11183433)
chr6 (15-188)||(2887427-2887600)
chr6 (15-188)||(2889149-2889322)
chr6 (25-181)||(21936781-21936937)
chr6 (20-193)||(21937512-21937684)
chr6 (197-256)||(21275925-21275984)
chr6 (197-260)||(21936675-21936738)
chr6 (197-257)||(24509852-24509912)
[»] chr4 (25 HSPs)
chr4 (15-194)||(35095965-35096144)
chr4 (15-193)||(30019939-30020117)
chr4 (15-194)||(35090852-35091031)
chr4 (15-193)||(32429372-32429550)
chr4 (15-258)||(54859169-54859424)
chr4 (15-184)||(34279589-34279758)
chr4 (20-152)||(3424830-3424962)
chr4 (15-184)||(47071345-47071514)
chr4 (41-184)||(18670803-18670946)
chr4 (15-255)||(34128254-34128504)
chr4 (15-184)||(18716424-18716595)
chr4 (15-184)||(18737097-18737268)
chr4 (72-184)||(14643828-14643940)
chr4 (15-96)||(3415338-3415419)
chr4 (197-256)||(35091067-35091126)
chr4 (197-256)||(35096180-35096239)
chr4 (197-252)||(22118857-22118912)
chr4 (197-260)||(32429282-32429345)
chr4 (106-167)||(34602060-34602121)
chr4 (184-260)||(3409597-3409673)
chr4 (197-260)||(3424699-3424762)
chr4 (197-255)||(34279507-34279565)
chr4 (184-257)||(18670969-18671042)
chr4 (197-234)||(25618315-25618352)
chr4 (197-257)||(30019839-30019899)
[»] chr2 (13 HSPs)
chr2 (15-194)||(17720614-17720793)
chr2 (15-192)||(14917472-14917649)
chr2 (15-194)||(45120323-45120502)
chr2 (15-193)||(42780121-42780298)
chr2 (15-194)||(30283529-30283708)
chr2 (41-172)||(716230-716361)
chr2 (12-184)||(16284371-16284544)
chr2 (197-255)||(20892343-20892401)
chr2 (197-254)||(14917377-14917434)
chr2 (197-256)||(17720519-17720578)
chr2 (197-260)||(42780325-42780388)
chr2 (197-256)||(45120539-45120598)
chr2 (197-260)||(30283439-30283502)
[»] chr1 (27 HSPs)
chr1 (15-194)||(3465410-3465589)
chr1 (15-194)||(28574234-28574413)
chr1 (15-194)||(28598246-28598425)
chr1 (25-194)||(3468014-3468183)
chr1 (78-271)||(17414546-17414740)
chr1 (20-193)||(10186668-10186845)
chr1 (15-184)||(1187765-1187933)
chr1 (25-193)||(43358700-43358868)
chr1 (15-257)||(16051143-16051397)
chr1 (35-184)||(35626129-35626278)
chr1 (25-194)||(44524110-44524276)
chr1 (15-193)||(13654272-13654452)
chr1 (21-193)||(19310767-19310939)
chr1 (89-184)||(21431770-21431865)
chr1 (6-120)||(29681518-29681632)
chr1 (20-120)||(48366213-48366313)
chr1 (197-256)||(28574449-28574508)
chr1 (197-256)||(28598461-28598520)
chr1 (15-184)||(3696404-3696571)
chr1 (197-251)||(3468220-3468274)
chr1 (197-258)||(21431673-21431734)
chr1 (199-271)||(3701476-3701548)
chr1 (184-257)||(10186573-10186646)
chr1 (197-260)||(19310965-19311028)
chr1 (197-251)||(43358895-43358949)
chr1 (197-234)||(44524048-44524085)
chr1 (204-260)||(13654468-13654524)
[»] scaffold0223 (2 HSPs)
scaffold0223 (15-192)||(2109-2286)
scaffold0223 (197-256)||(2012-2071)
[»] scaffold0006 (2 HSPs)
scaffold0006 (15-193)||(144033-144213)
scaffold0006 (204-260)||(144229-144285)
[»] scaffold0005 (1 HSPs)
scaffold0005 (72-184)||(173352-173464)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4555576 - 4555846
Alignment:
Q  1 accaacaaattcctttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtacca 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4555576 accaacaaattcctttcaagatattacgagttcattgatgtgtattgcaaaatcacaccaaacatatttcttaacattattttacagatttatggtacca 4555675  T
Q  101 ataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaatcgatgc 200  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  4555676 ataattcactcatgcattagagaattaatggatgatttagagtaatagaatggtgaagaattatgttgttaatgtaacaaaattgtgtccaaatcgatgc 4555775  T
Q  201 ccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccccttagccacaggtt 271  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  4555776 ccaaatgtcaagcatttatagtgcattatatgactattaacatgagagaaaacaccccttagccaaaggtt 4555846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 9877806 - 9877627
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  9877806 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 9877707  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  9877706 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 9877627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 39903782 - 39903961
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  39903782 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 39903881  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  39903882 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 39903961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 39908895 - 39909074
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  39908895 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 39908994  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  39908995 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 39909074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 9872691 - 9872512
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  9872691 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 9872592  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||||| |||||||||    
T  9872591 cattagagaattgatggatgatttagaataatagaattgtgaagaattatgttgttaatgtaacaaaattctgtccaaat 9872512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 2022901 - 2023079
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || || ||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  2022901 ttcaggatactatgagttccttgacgtgtattgcacaaccaaaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 2023000  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  2023001 cattagagaattgatggatgatttagaataagagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaa 2023079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 13556567 - 13556393
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||  ||||||||| ||||||||| |||  |||||||| ||||||||    
T  13556567 gatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaaccgtattttacatatttatggttccagcaattcactcatgcatta 13556468  T
Q  120 gagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    |||||||||||||||||||||| ||| ||||||  |||||||| |||||||||||||||||| || |||||||||    
T  13556467 gagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaacaaacttctgtccaaat 13556393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 35369153 - 35368989
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| ||||||||| ||||||||||||||| || |||||||| ||||| || ||| | |||||||||||||||||||  ||| |||||||| ||||||||    
T  35369153 gatactatgagttccttgatgtgtattgcacaaccacaccaagcgtatctcctaatagtattttacagatttatggttacaacaattcactcatgcatta 35369054  T
Q  120 gagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    |||||||||||||||||||||||||| ||||||  |||||||| |||| || ||| |||||||||    
T  35369053 gagaattgatggatgatttagagtaagagaatgaggaagaattatgtttttgatgcaacaaaatt 35368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 43378374 - 43378491
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||||||| ||||| |||| |||||||||| |||||||  || ||||| || ||||| ||||||||||||||||||| |||  ||||||||||||    
T  43378374 ttcaggatattattagttccttgacgtgtattgcacaatcacattaagcgtatctcctaacagtattttacagatttatggttccagcaattcactaatg 43378473  T
Q  115 cattagagaattgatgga 132  Q
    ||||| ||||||||||||    
T  43378474 cattaaagaattgatgga 43378491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 25184035 - 25184186
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| || ||||||| || || ||||| ||||| ||  |||| |||||||||||||| | | |      ||||||||||     
T  25184035 ttcaggatactatgagttccttgacgtttattgcacaaccataccaagcgtatctccaaacaatattttacagatttctagca------attcactaata 25184128  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaa 172  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||    
T  25184129 cattagagaattgatggatgatttagagtaagagaatggtgaagaaatatgttgttaa 25184186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 43540928 - 43540857
Alignment:
Q  113 tgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||||||||| ||||||||||||||| ||||||  | |||| | |||||||||||||||||||||    
T  43540928 tgcattagagaattgatagatgatttagagtaagagaatgatggagaactatgttgttaatgtaacaaaatt 43540857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 35368953 - 35368895
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||    
T  35368953 atgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacac 35368895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 13556356 - 13556296
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| |||||    
T  13556356 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcaccc 13556296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 9872476 - 9872417
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  9872476 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 9877591 - 9877532
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  9877591 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 39909110 - 39909169
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  39909110 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 2023106 - 2023166
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||||| ||||||||||||||||||| ||||||||||| || ||| |||||||| |||||    
T  2023106 atgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcaccc 2023166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 39903997 - 39904056
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  39903997 atgccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39904056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 20891000 - 20891247
Alignment:
Q  19 agatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatt 118  Q
    ||||| ||||||||| |||||||||||| || |||||||| || ||||| |||||||| ||||||| ||||||||||| |||  |||||||| |||||||    
T  20891000 agatactatgagttccttgatgtgtattacacaatcacacaaagcgtatctcttaacagtattttatagatttatggttccagcaattcactcatgcatt 20891099  T
Q  119 agagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt-gtgtccaaatcgatgcccaaatgtcaagcattt 217  Q
    |||||||||||||||||||||||||||  |||||  | |||||| ||||||| |||||||||| || |||| ||||| ||| |||||||| |||||||||    
T  20891100 agagaattgatggatgatttagagtaagcgaatgagggagaattatgttgtttatgtaacaaagttcgtgttcaaattgatacccaaatgccaagcattt 20891199  T
Q  218 atagtgtattatatgactattaacacgagagaaaacaccccttagcca 265  Q
    |||||| ||||||||||  || ||| ||||||||||||||||| ||||    
T  20891200 atagtgcattatatgacccttcacatgagagaaaacacccctttgcca 20891247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 31081774 - 31081595
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||||||||| || ||||| ||||||||||||||||||| |||| |||||||| |||    
T  31081774 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaaacgtatctcctaacagtattttacagatttatggttccaacaattcactcatg 31081675  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  31081674 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 31081595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 256
Target Start/End: Complemental strand, 18024392 - 18024173
Alignment:
Q  38 atgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatt 137  Q
    |||||||||||| ||||||||||| ||||| | |||||| |||||||||||||||| || | || |||||| | ||||||||||||||||||| ||||||    
T  18024392 atgtgtattgcacaatcacaccaagcgtatctgttaacaatattttacagatttattgttctaacaattcattcatgcattagagaattgatgaatgatt 18024293  T
Q  138 tagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt-gtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgacta 236  Q
    |||||||| ||||||  | |||||| ||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||| ||||||||||      
T  18024292 tagagtaagagaatgagggagaattatgttgttaatgtaacaaaattagtatccaaattgatgaccaaatgtcaagcatttatagtgcattatatgaccc 18024193  T
Q  237 ttaacacgagagaaaacacc 256  Q
    || ||| |||||||||||||    
T  18024192 ttcacatgagagaaaacacc 18024173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 31076669 - 31076490
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||||||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  31076669 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaaacgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 31076570  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  31076569 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 31076490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 6858331 - 6858143
Alignment:
Q  6 caaattcctttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataat 105  Q
    ||||| || ||||||||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||    
T  6858331 caaatccccttcaagatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaat 6858232  T
Q  106 tcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  6858231 tcactcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 6858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 1302512 - 1302333
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  1302512 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 1302413  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  1302412 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattttgtccaaat 1302333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 4049744 - 4049923
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  4049744 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 4049843  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  4049844 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 4049923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 10673205 - 10673026
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  10673205 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 10673106  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  10673105 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 10673026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 10678320 - 10678141
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  10678320 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 10678221  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  10678220 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 10678141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 8458248 - 8458427
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  8458248 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 8458347  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  8458348 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 8458427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 8464687 - 8464866
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  8464687 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 8464786  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  8464787 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 8464866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 10591562 - 10591383
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| |||||||||||||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  10591562 ttcaggatactatgagttcattgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 10591463  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||| |||||||||    
T  10591462 cattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaacaaaattctgtccaaat 10591383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 33702867 - 33702688
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||| ||||||||| |||  |||||||| |||    
T  33702867 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacatatttatggttccagcaattcactcatg 33702768  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  33702767 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 33702688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 33703236 - 33703415
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||| | ||||||||||||||||||| |||  |||||||| |||    
T  33703236 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaatagtattttacagatttatggttccagcaattcactcatg 33703335  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  33703336 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattatgtccaaat 33703415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5458279 - 5458102
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  5458279 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 5458180  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||    
T  5458179 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaa 5458102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 5481755 - 5481578
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  5481755 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 5481656  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||    
T  5481655 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaa 5481578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 6853219 - 6853040
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  ||||||||  ||    
T  6853219 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcgtg 6853120  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  6853119 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 6853040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 4054878 - 4055057
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| || | |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  4054878 ttcaggatactatgagttccttaacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 4054977  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| | |||||||    
T  4054978 cattaaagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctatccaaat 4055057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 3187710 - 3187514
Alignment:
Q  26 atgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaat 125  Q
    |||||||  ||||||||||||||| ||| |||| ||  |||| |||||||| ||||||||||||||||||| | |  |||||||| |||||||| |||||    
T  3187710 atgagtttcttgatgtgtattgcacaattacacaaagtgtatctcttaacaatattttacagatttatggttcgagcaattcactcatgcattaaagaat 3187611  T
Q  126 tgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt-gtgtccaaatcgatgcccaaatgtcaagcatttatag 221  Q
    |||| ||||||||||||||| ||||||  | |||||| |||||||||||| |||||||| |||| ||||  |||| |||||||||||  ||||||||    
T  3187610 tgatagatgatttagagtaagagaatgagggagaattatgttgttaatgtcacaaaattcgtgttcaaactgatgtccaaatgtcaaatatttatag 3187514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 10585062 - 10584946
Alignment:
Q  78 tattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaa 177  Q
    ||||||||||||||||||| | |   ||||||| |||||||||||||||||||||||||||||| ||||||||||  || ||||| ||||||||||||||    
T  10585062 tattttacagatttatggttctagctattcactcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaa 10584963  T
Q  178 caaaattgtgtccaaat 194  Q
    ||||||| |||||||||    
T  10584962 caaaattctgtccaaat 10584946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 49784443 - 49784611
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || || ||||||| ||| || ||||| |||||| |||||||||||| |||  |||||||| ||| |||||||||    
T  49784443 tatgagttctttgacgtgtattgcacaaccataccaaacatatctcctaacaatattttccagatttatggttccagcaattcactcatgaattagagaa 49784542  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||| ||||||||| ||||| ||||||  |  ||||| ||||||||||| ||||||||| ||||||||    
T  49784543 ttgatagatgatttaaagtaaaagaatgagggggaattatgttgttaatgcaacaaaattctgtccaaa 49784611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 29827366 - 29827530
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    ||||||||| ||||||||| |||| |||||||||| || ||||||||  |||| || ||||| ||||||||||||||||     ||  |||||||| |||    
T  29827366 ttcaagatactatgagttccttgacgtgtattgcacaaccacaccaagggtatctcctaacagtattttacagatttat-----cagcaattcactcatg 29827460  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    |||||||||||||||| |||||||||||||| ||||||  | ||||||  ||| |||||| |||||||||    
T  29827461 cattagagaattgatgaatgatttagagtaagagaatgagggagaattaggttattaatgcaacaaaatt 29827530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 4049960 - 4050019
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  4049960 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 4050019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 10584910 - 10584851
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  10584910 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 10584851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 49784638 - 49784696
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||    
T  49784638 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacac 49784696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 1302296 - 1302237
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  1302296 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 1302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 4055094 - 4055153
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  4055094 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 4055153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 5458063 - 5458004
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  5458063 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 5481540 - 5481481
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  5481540 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 6853004 - 6852945
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  6853004 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 6852945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 6858107 - 6858048
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  6858107 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacc 6858048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 8464902 - 8464961
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  8464902 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 8464961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 10591347 - 10591288
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  10591347 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10591288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 10672990 - 10672931
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  10672990 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10672931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 33702651 - 33702592
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  33702651 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 33702592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 33703452 - 33703506
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaa 251  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||    
T  33703452 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 8458470 - 8458523
Alignment:
Q  203 aaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  8458470 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 8458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 31076454 - 31076395
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    |||||||||||||||||||||||| || ||||||||||| || ||| |||||||| ||||    
T  31076454 atgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31076395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 31081559 - 31081500
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    |||||||||||||||||||||||| || ||||||||||| || ||| |||||||| ||||    
T  31081559 atgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31081500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 232
Target Start/End: Complemental strand, 10678105 - 10678070
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatg 232  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10678105 atgcccaaatgtcaagcatttatagtgcattatatg 10678070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 29827556 - 29827618
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    ||||||||||| |||||||||||| || ||||||||||| || ||| || ||||||||||||||    
T  29827556 atgcccaaatgccaagcatttataatgcattatatgact-ttcacatgatagaaaacacccctt 29827618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 14315178 - 14314999
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  14315178 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 14315079  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  14315078 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 14314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 14318882 - 14318703
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  14318882 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 14318783  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  14318782 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 14318703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 26982143 - 26981964
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26982143 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26982044  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26982043 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26981964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 26987256 - 26987077
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26987256 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26987157  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26987156 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26987077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 34108166 - 34108343
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  34108166 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 34108265  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||    
T  34108266 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaa 34108343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 18608895 - 18608726
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| ||||||||||||||| || |||||||| ||||| || ||||| |||||||||||||||| || ||   |||| ||| |||    
T  18608895 ttcaggataatatgagttccttgatgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatcgttccgtcaattaactcatg 18608796  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||||||||||||||||||||||| ||||||  | |||||| |||||||||||||||||||||    
T  18608795 cattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatt 18608726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 18494395 - 18494264
Alignment:
Q  63 cgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaatt 162  Q
    ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  18494395 cgtatctcctaacagtattttacagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagaataatagaatggtgaagaatt 18494296  T
Q  163 gtgttgttaatgtaacaaaattgtgtccaaat 194  Q
     ||||||||||||||||||||| | |||||||    
T  18494295 atgttgttaatgtaacaaaattctatccaaat 18494264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 10341224 - 10341046
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| ||  ||||||| ||||| || ||||| ||||||||||||||||| | |||  |||||||| |||    
T  10341224 ttcatgatactatgagttccttgacgtgtattgcacaactacaccaagcgtatctcctaacaatattttacagatttatgattccagcaattcactcatg 10341125  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    |||||||||||| |||||||||||||||||| ||||||  | |||||| ||||||||||| ||||||||| ||||||||    
T  10341124 cattagagaatttatggatgatttagagtaagagaatgagggagaattatgttgttaatgcaacaaaattctgtccaaa 10341046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 43957106 - 43956937
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| | ||||||| |||||||||  ||  |||||||| |||||||||||||    
T  43957106 tatgagttctttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtgttttacaaatttatggtttcagcaattcactcatgcattagagaa 43957007  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||| ||| ||||||  |||||||| ||||||||||| ||||||||| |||||||||    
T  43957006 ttgatggatgatttagaataagagaatgatgaagaattatgttgttaatgcaacaaaattatgtccaaat 43956937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 25953416 - 25953248
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || |||||| | ||||| || ||||| |||| |||| ||||||||| | |  |||||||| |||||||||| ||    
T  25953416 tatgagttccttgacgtgtattgcacaaccacacctagcgtatctcctaacagtattgtacatatttatggttcaagcaattcactcatgcattagacaa 25953317  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||||||||  ||||||  | |||||| ||||||||||||||||||||| ||||||||    
T  25953316 ttgatggatgatttagagtatgagaatgatggagaattatgttgttaatgtaacaaaattctgtccaaa 25953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 18885015 - 18885136
Alignment:
Q  29 agttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattga 128  Q
    ||||| ||||||||||||||| ||||||||||| | ||| ||||||||  |||||||||||||||||| |||  |||||||| |||||||||||||||||    
T  18885015 agttccttgatgtgtattgcacaatcacaccaagcatatctcttaacaggattttacagatttatggttccagcaattcactcatgcattagagaattga 18885114  T
Q  129 tggatgatttagagtaatagaa 150  Q
    | ||||||||||||||| ||||    
T  18885115 ttgatgatttagagtaagagaa 18885136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 14314963 - 14314904
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  14314963 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14314904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 14318667 - 14318608
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  14318667 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 18494228 - 18494169
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  18494228 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 18494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 26987041 - 26986982
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26987041 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 34108383 - 34108442
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  34108383 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 34108442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 43956902 - 43956848
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaa 251  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||    
T  43956902 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 43956848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 26981927 - 26981868
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||| ||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26981927 atgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacc 26981868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 1781877 - 1781939
Alignment:
Q  116 attagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaac 178  Q
    |||||||||||| |||||||||| |||||| ||||||  | | |||| |||||||||||||||    
T  1781877 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 1781939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 25953211 - 25953167
Alignment:
Q  213 catttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||||||||| |||||||||| ||| ||| ||||||||||||||    
T  25953211 catttatagtgcattatatgaccattcacatgagagaaaacaccc 25953167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 12856726 - 12856905
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  12856726 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 12856825  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  12856826 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 12856905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26050958 - 26051137
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26050958 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26051057  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26051058 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26051137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26056071 - 26056250
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26056071 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26056170  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26056171 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26056250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26060317 - 26060496
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26060317 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26060416  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26060417 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26060496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26065430 - 26065609
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  26065430 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 26065529  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  26065530 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 26065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 12851611 - 12851790
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  12851611 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 12851710  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  12851711 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattttgtccaaat 12851790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 14610301 - 14610480
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||  |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  14610301 ttcaggatactatgagtttcttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 14610400  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  14610401 cattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 14610480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 37460108 - 37459857
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| ||||||||||||||| || |||| ||| ||||| |||||||| |||||||||||| ||||||  ||  ||||| ||||||    
T  37460108 ttcatgatactatgagttccttgatgtgtattgcacaaccacatcaagcgtatctcttaacaatattttacagatatatggtttcagcaattcgctaatg 37460009  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaat-----------tgtgtccaaatcgatgccca 203  Q
    ||| ||||||||||||||||||||||||||| ||||||  | |||||| ||||||| |||||||| |||           | |||||| ||  |||||||    
T  37460008 catcagagaattgatggatgatttagagtaagagaatgtgggagaattatgttgttcatgtaacataattcctatatttgtatgtccatattaatgccca 37459909  T
Q  204 aatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    ||||||||| |||||||||| |||||||| | ||| ||| ||||||||||||    
T  37459908 aatgtcaagtatttatagtgcattatatgtccattcacatgagagaaaacac 37459857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 11056562 - 11056720
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||| |||| |||||||| |||    
T  11056562 ttcaggatactatgagttccttgacgtgtgttgcacaatcacaccaaacgtatctcctaatagtattttacagatttatggttccaacaattcactcatg 11056661  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaat 173  Q
    ||||| ||||||||||||||||||| ||||| ||||||   ||||||| ||||||||||    
T  11056662 cattaaagaattgatggatgatttaaagtaagagaatgataaagaattatgttgttaat 11056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 4181648 - 4181396
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| ||||  ||||||||| || |||| ||| ||||| |  ||||| |||||||| | |||||||| | |  ||| |||| |||    
T  4181648 ttcatgatactatgagttccttgacatgtattgcacaaccacatcaagcgtatctactaacagtattttacgggtttatggttcgagcaat-cactcatg 4181550  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaat---------tgtgt---ccaaatcgatgccc 202  Q
    ||||||||||||||||||||||||||| ||| ||||||  | |||||| ||||||||||| ||||||||         |||||    |||||  ||||||    
T  4181549 cattagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatgcaacaaaattctcgtttatgtgtgtgtcaaattaatgccc 4181450  T
Q  203 aaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||| ||||||||||| ||||||||||| || | | |||||||||||||    
T  4181449 aaatgtcaaacatttatagtgcattatatgactcttcatatgagagaaaacacc 4181396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 35352558 - 35352422
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| |||||||||  |||||||||||||| || |||| |||  |||  || ||||| ||||||| ||||||||||| |||  |||||||| |||    
T  35352558 ttcaggatactatgagttccatgatgtgtattgcacaaccacatcaagagtaactcctaacagtattttatagatttatggttccagcaattcactcatg 35352459  T
Q  115 cattagagaattgatggatgatttagagtaatagaat 151  Q
    |||||||||||||||||||| |||| ||||| |||||    
T  35352458 cattagagaattgatggatggtttatagtaagagaat 35352422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 5436792 - 5436692
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| |||||| || |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| | |  |||||||||||||||||    
T  5436792 gatactatgaggtccttgacgtgtattgcacaaccacaccaagcgtatctcctaacaatattttacagatttatggttcaagcaattcactaatgcatta 5436693  T
Q  120 g 120  Q
    |    
T  5436692 g 5436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 5440492 - 5440388
Alignment:
Q  78 tattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaa 177  Q
    |||||||||||| |||||| |||  |||| ||| | || ||||||||||||| |||||||||||||||  |||||  | |||||| ||||||||||||||    
T  5440492 tattttacagatgtatggttccagcaatttactcaagctttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5440393  T
Q  178 caaaa 182  Q
     ||||    
T  5440392 taaaa 5440388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 5449502 - 5449398
Alignment:
Q  78 tattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaa 177  Q
    |||||||||||| |||||| |||  |||| ||| | || ||||||||||||| |||||||||||||||  |||||  | |||||| ||||||||||||||    
T  5449502 tattttacagatgtatggttccagcaatttactcaagctttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaa 5449403  T
Q  178 caaaa 182  Q
     ||||    
T  5449402 taaaa 5449398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 12856941 - 12857000
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  12856941 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 12857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 5440365 - 5440292
Alignment:
Q  184 tgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    |||||||||||  | ||||||||| ||||||||||||||| ||||||||||  || ||| ||||||||||||||    
T  5440365 tgtgtccaaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacaccc 5440292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 5449375 - 5449302
Alignment:
Q  184 tgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    |||||||||||  | ||||||||| ||||||||||||||| ||||||||||  || ||| ||||||||||||||    
T  5449375 tgtgtccaaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacaccc 5449302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 12851828 - 12851887
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    |||||||||||||||| |||||||||| ||||||||||| || ||| |||||||| ||||    
T  12851828 atgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacc 12851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 26051173 - 26051232
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26051173 atgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 26056286 - 26056345
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26056286 atgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26056345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 26060532 - 26060591
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26060532 atgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 26065645 - 26065704
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  26065645 atgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26065704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 35352387 - 35352336
Alignment:
Q  183 ttgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgac 234  Q
    ||||||||||||  ||||||||||||||||||| ||| ||| ||||||||||    
T  35352387 ttgtgtccaaattaatgcccaaatgtcaagcatatatggtgcattatatgac 35352336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 21275710 - 21275889
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  21275710 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 21275809  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  21275810 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 21275889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 24509085 - 24508849
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||| ||||||| | |||| |||||||| |||||||||||||    
T  24509085 tatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacaaatttatgattccaacaattcactcatgcattagagaa 24508986  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgt-ccaaatcgatgcccaaatgtcaagcatttatagtg 223  Q
    ||||||||||||||||||||| ||||||  | |||||| |||||||||||||||| |||| ||| | ||||  ||||||||||| ||| |||||| |||     
T  24508985 ttgatggatgatttagagtaaaagaatgatggagaattatgttgttaatgtaacataattttgtacaaaattaatgcccaaatgccaaacatttacagta 24508886  T
Q  224 tattatatgactattaacacgagagaaaacacccctt 260  Q
     || |||||||  ||  || |||||||||||||||||    
T  24508885 cataatatgacccttctcatgagagaaaacacccctt 24508849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 20752385 - 20752207
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| || |||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||| |||||||| |||    
T  20752385 ttcaggatactacgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccaacaattcactcatg 20752286  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||| ||||||||||||||||| ||| ||||| ||||||| |||||||| ||||||||||||||||||||| | ||||||    
T  20752285 catcagagaattgatggatgacttatagtaagagaatggtgaagaattatgttgttaatgtaacaaaattctttccaaa 20752207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 24509650 - 24509818
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| ||||||||||||||| || |||||||  ||||| || ||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  24509650 tatgagttccttgatgtgtattgcacaaccacaccatgcgtatctcctaacagtattttacaaatttatggttccaacaattcactaatgcattagagaa 24509749  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||| ||||| ||||||  | |||||| |||||||||||||||| |||| ||| ||||    
T  24509750 ttgatggatgatttaaagtaaaagaatgatggagaattatgttgttaatgtaacataattttgtacaaa 24509818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 11183433 - 11183264
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    ||||||||||||||||||| |||||||||||| || || ||||||||| |||| || ||||| |||||||||| ||||||||  ||  |||| ||| |||    
T  11183433 ttcaagatattatgagttccttgatgtgtattacacaaccacaccaaatgtatctcctaacagtattttacaggtttatggtttcagcaatttactcatg 11183334  T
Q  115 cattagagaattgatggatgatttagagtaatagaatg-gagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||||||| ||||||||||||||| |||||| ||| |||||| |||| ||| ||||||||||||    
T  11183333 cattagagaattgattgatgatttagagtaagagaatgagag-agaattatgttattattgtaacaaaatt 11183264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 2887427 - 2887600
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||| ||| || | |||||||||| || |||||||||  ||| |||||||| ||||||||||||||||| | |||  |||||||| |||    
T  2887427 ttcacgatactatgaattccttcacgtgtattgcacaaccacaccaaatatatctcttaacactattttacagatttatgattccagcaattcactcatg 2887526  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgt 188  Q
    ||||||||| ||||||||||||||||||||| ||||||  | |||||| ||||| ||||| |||||||||||||    
T  2887527 cattagagagttgatggatgatttagagtaagagaatgagggagaattatgttggtaatggaacaaaattgtgt 2887600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 2889149 - 2889322
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||| ||| || | |||||||||| || |||||||||  ||| |||||||| ||||||||||||||||| | |||  |||||||| |||    
T  2889149 ttcacgatactatgaattccttcacgtgtattgcacaaccacaccaaatatatctcttaacactattttacagatttatgattccagcaattcactcatg 2889248  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgt 188  Q
    ||||||||| |||||| |||||||||||||| ||||||  | |||||| ||||| ||||| |||||||||||||    
T  2889249 cattagagagttgatgaatgatttagagtaagagaatgagggagaattatgttggtaatggaacaaaattgtgt 2889322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 21936937 - 21936781
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| ||||||||||||||| || |||| | |  |||| || ||| | ||||||||||||||||||| |||  |||||||| |||||||||||||    
T  21936937 tatgagttccttgatgtgtattgcacaaccacatcgagtgtatctcctaataatattttacagatttatggttccagcaattcactcatgcattagagaa 21936838  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaa 181  Q
    ||||| ||||||||||||||  ||||||  | |||||| ||||||||||||||||||    
T  21936837 ttgatagatgatttagagtatgagaatgatggagaattatgttgttaatgtaacaaa 21936781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 21937512 - 21937684
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| ||||||||| ||| ||||||||||| || |||||||| ||||| || ||||| |||| |||| ||||||||| |||  |||||||| |||||||     
T  21937512 gatactatgagttccttgttgtgtattgcacaaccacaccaagcgtatctcgtaacaatattatacaaatttatggttccagcaattcactcatgcattt 21937611  T
Q  120 gagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||| |||||| ||| ||| ||  | | |||| |||||||||||| |||||||| ||||||||    
T  21937612 gagaattgatggatgttttagaataagagagtgatggaaaattatgttgttaatgt-acaaaattatgtccaaa 21937684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 21275925 - 21275984
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  21275925 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 21275984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 21936738 - 21936675
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||||||||||| |||||||||||||| ||||||||||  || ||| |||||||||||||||||    
T  21936738 atgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctt 21936675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 24509852 - 24509912
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||||||||||||||||||||||||| |||||||||   || ||| ||||||||||||||    
T  24509852 atgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacaccc 24509912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 35095965 - 35096144
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  35095965 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 35096064  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  35096065 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 35096144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 30020117 - 30019939
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||||||||| || ||||| ||||| ||| ||||||||| |||| |||||||| |||    
T  30020117 ttcaggatactatgagttccttgacgtgtattgcataaccacaccaaacgtatctcctaacagtatttcacatatttatggttccaacaattcactcatg 30020018  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  30020017 cattagagaattgatggatgatttagagtaagagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaa 30019939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 35090852 - 35091031
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  35090852 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 35090951  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| |||||||||   || ||||| ||||||||||||||||||||| |||||||||    
T  35090952 cattagagaattgatggatgatttagaataatagaattttgatgaattatgttgttaatgtaacaaaattctgtccaaat 35091031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 32429550 - 32429372
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || ||||| || ||||| || ||||| ||||||||||||||||||| |||| |||||||| |||    
T  32429550 ttcaggatactatgagttccttgacgtgtattgcacaaccacacaaagcgtatctcctaacagtattttacagatttatggttccaacaattcactcatg 32429451  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||| ||||||||||||||||||||||||| ||||||  | |||||| ||||||||||  ||||||||| ||||||||    
T  32429450 cattaaagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatccaacaaaattctgtccaaa 32429372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 54859424 - 54859169
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||||||||||| || ||  ||||||||||||| || ||||| |||||||| |||||||||| |||  ||||||||  ||    
T  54859424 ttcatgataatatgagttccttgatgtgtattacacaactacaccaaacgtatctcctaacagtattttacggatttatggttccagcaattcactcgtg 54859325  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaa------------ttgtgtccaaatcgatgccc 202  Q
    |||||||||||||||||||||||||||| || ||||||  | |||||  |||||||||||| ||||||            ||||||||||||  ||||||    
T  54859324 cattagagaattgatggatgatttagagcaagagaatgagggagaatcatgttgttaatgtgacaaaattccatttttggttgtgtccaaattaatgccc 54859225  T
Q  203 aaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccc 258  Q
    |||| |||||||||||||||| ||||||||||  || ||| |||||||||||||||    
T  54859224 aaatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacacccc 54859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 34279758 - 34279589
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    ||||| ||| ||||||||  |||| |||||||||| || |||||||| ||||| || ||||| |||||||||||||||||||  ||  |||||||| |||    
T  34279758 ttcaaaatactatgagtttcttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggtttcaggaattcactcatg 34279659  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||||||||| ||||||||||||| |||| |  |||||||| |||||||||||||||||||||    
T  34279658 cattagagaattgatggttgatttagagtaagagaacgaggaagaattatgttgttaatgtaacaaaatt 34279589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 3424962 - 3424830
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||||||||||||||||| | ||| ||| ||||| ||||||||    
T  3424962 gatactatgagttcattgatgtgtattgcacaaccacaccaaccgtatctcctaacagtattttacagatttatgtttccagtaactcactcatgcatta 3424863  T
Q  120 gagaattgatggatgatttagagtaatagaatg 152  Q
    ||||||| |||||||||||||||||| ||||||    
T  3424862 gagaattaatggatgatttagagtaagagaatg 3424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 47071345 - 47071514
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| ||||||||||||||| || |||||||| | ||| || || || ||||||||| ||||||||| | || |||||||| ||     
T  47071345 ttcatgatactatgagttccttgatgtgtattgcacaaccacaccaatcatatctcatatcagtattttacaaatttatggttcaaacaattcactcatt 47071444  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||||||| ||| ||||||||||| ||||||  | |||||| |||||||||||||||||||||    
T  47071445 cattagagaattgatagataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatt 47071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 18670803 - 18670946
Alignment:
Q  41 tgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttag 140  Q
    ||||||||| || ||||||||  |||| || ||||| ||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||    
T  18670803 tgtattgcacaaccacaccaagtgtatctcctaacaatattttacagatttatggttccaacaagtcactcatgcattagagaattgatggatgatttag 18670902  T
Q  141 agtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||| ||||||  | |||||| ||||||||||| |||| ||||    
T  18670903 agtaagagaatgagggagaattatgttgttaatgcaacataatt 18670946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 34128504 - 34128254
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||   ||| |||||||||| || |||||||||| ||| || ||||  |||||||||||||||||||  ||| |||||||| |||    
T  34128504 ttcaggatactatgagtttcatgaggtgtattgcacaaccacaccaaacatatctcctaaccatattttacagatttatggtttcaacaattcactcatg 34128405  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaa---ttgtgtc-------caaatcgatgcccaa 204  Q
    ||||||| ||||||||||||||||||||||| ||||||  | |||||| || |||||||| |||||||   |||| ||       |||||  ||| ||||    
T  34128404 cattagaaaattgatggatgatttagagtaagagaatgagggagaattatgatgttaatgcaacaaaattcttgtttcttagtgtcaaattaatggccaa 34128305  T
Q  205 atgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    ||||||||||||||||||| ||||||||||  || |||  |||||||||||    
T  34128304 atgtcaagcatttatagtgcattatatgacccttcacattagagaaaacac 34128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 18716424 - 18716595
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacac--caaacgtatttcttaacattattttacagatttatggtaccaataattcactaa 112  Q
    |||| |||| || |||||| |||| |||||||||| || |||||  ||| ||||| |  ||| | ||||||||||||||||||| |||  ||||||||      
T  18716424 ttcaggatactaagagttctttgacgtgtattgcacaaccacacaccaagcgtatcttctaatagtattttacagatttatggttccagcaattcactct 18716523  T
Q  113 tgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    || |||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||    
T  18716524 tgtattagagaattgatggatgatttagagtaagagaatgggggagaattatgttgttaatgcaacaaaatt 18716595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 18737097 - 18737268
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacac--caaacgtatttcttaacattattttacagatttatggtaccaataattcactaa 112  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||  ||| || || |  ||| | ||||||||||||||||||| |||  |||||||| |    
T  18737097 ttcaggatactatgagttccttgacgtgtattgcacaaccacacaccaagcgaatcttctaaaagtattttacagatttatggttccagcaattcactca 18737196  T
Q  113 tgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    || |||||||||||||||||||||||||||||| ||||||  | |||||| ||||||||||| |||||||||    
T  18737197 tgaattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgcaacaaaatt 18737268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 14643940 - 14643828
Alignment:
Q  72 taacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgtta 171  Q
    ||||| ||||||| ||||||||||| |||  |||||||  || ||||||||||||||||||||||||||||||| |||||   |||||||| |||||||     
T  14643940 taacagtattttagagatttatggttccagcaattcacctatacattagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttg 14643841  T
Q  172 atgtaacaaaatt 184  Q
    |||||||||||||    
T  14643840 atgtaacaaaatt 14643828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3415419 - 3415338
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggt 96  Q
    |||| |||| ||||||||||||||||||||||||| || |||||||| ||||| || ||| | |||||||||||||||||||    
T  3415419 ttcaggatactatgagttcattgatgtgtattgcacaaccacaccaaccgtatctcctaatagtattttacagatttatggt 3415338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 35091067 - 35091126
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  35091067 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35091126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 35096180 - 35096239
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  35096180 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35096239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 22118857 - 22118912
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaa 252  Q
    |||||||||||||||||||||||||| |||||||||||  || ||| |||||||||    
T  22118857 atgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaa 22118912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 32429345 - 32429282
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||| |||||| ||||||||||||||| ||||||||||| || | | |||||||||||||||||    
T  32429345 atgcacaaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctt 32429282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 34602121 - 34602060
Alignment:
Q  106 tcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgtt 167  Q
    ||||| |||||| ||| ||||||||||||||||||||||| ||||||  | |||||||||||    
T  34602121 tcactcatgcataagaaaattgatggatgatttagagtaaaagaatgagggagaattgtgtt 34602060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 3409673 - 3409597
Alignment:
Q  184 tgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||||| ||||  |||||||||||||||  |||||||||| ||||||||||  || ||| |||||||||||| ||||    
T  3409673 tgtgtctaaattaatgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacactcctt 3409597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 3424762 - 3424699
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||||||||| ||||  |||||||||| ||||||||||  || ||| |||||||||||||||||    
T  3424762 atgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaacacccctt 3424699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 34279565 - 34279507
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    |||| |||||||| ||||||||||||| ||||||||||  || ||| ||||||||||||    
T  34279565 atgctcaaatgtcgagcatttatagtgcattatatgacccttcacatgagagaaaacac 34279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 18670969 - 18671042
Alignment:
Q  184 tgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    |||||||||||  || |||||||| ||||||||||||||  ||||||||||  || ||| |||||||| |||||    
T  18670969 tgtgtccaaattaattcccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcaccc 18671042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 25618352 - 25618315
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgac 234  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  25618352 atgcccaaatgccaagcatttatagtgcattatatgac 25618315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 30019899 - 30019839
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||||||||| ||| ||||||||||| ||||||||||  || ||| |||||||| |||||    
T  30019899 atgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcaccc 30019839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 17720793 - 17720614
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  17720793 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 17720694  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  17720693 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 17720614  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 14917649 - 14917472
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  14917649 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 14917550  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||    
T  14917549 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaa 14917472  T

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Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 45120323 - 45120502
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  45120323 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 45120422  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    |||| |||||||||||||||||||||| ||||||||||  |||||||| ||||||||||||||||||||| |||||||||    
T  45120423 cattggagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaacaaaattctgtccaaat 45120502  T

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Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 42780121 - 42780298
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || ||||||||| |||| || ||||| ||||||||| ||||||||| |||| |||||||| |||    
T  42780121 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaaatgtatctcctaacagtattttacaaatttatggttccaacaattcactcatg 42780220  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| ||| | ||||||||||||||| ||||||||    
T  42780221 cattagagaattgatggatgatttagagtaagagaatggtgaagaattatgtag-taatgtaacaaaattctgtccaaa 42780298  T

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Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 30283708 - 30283529
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||| | ||||||||||||||||||| | |  |||||||| |||    
T  30283708 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaatagtattttacagatttatggttctagcaattcactcatg 30283609  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||| ||||||||||||||| |||| |  | |||||| ||||||||||||||||||||| |||||||||    
T  30283608 cattagagaattgattgatgatttagagtaagagaaggatggagaattatgttgttaatgtaacaaaattctgtccaaat 30283529  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 716230 - 716361
Alignment:
Q  41 tgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttag 140  Q
    ||||||| | || |||||||||||||| || ||||  ||||||||||||||| ||| |||  |||||||| |||||||||||||||||||||||||||||    
T  716230 tgtattgtacaaccacaccaaacgtatctcctaactgtattttacagatttagggttccagcaattcactcatgcattagagaattgatggatgatttag 716329  T
Q  141 agtaatagaatggagaagaattgtgttgttaa 172  Q
    ||||| |||||| || |||||| |||||||||    
T  716330 agtaagagaatgaaggagaattatgttgttaa 716361  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 16284371 - 16284544
Alignment:
Q  12 cctttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcacta 111  Q
    ||||||| |||| ||||||||| |||| |||||||| | || |||||||| ||||| || |||   |||||||| ||||||||||  ||  ||||||||     
T  16284371 cctttcaggatactatgagttccttgacgtgtattgtacaaccacaccaagcgtatctcctaatggtattttactgatttatggtttcagcaattcactc 16284470  T
Q  112 atgcattagagaattgatggatga-tttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    |||||||||||| |||||| |||| |||||||||| ||||||  | |||||| | ||||||||| |||||||||    
T  16284471 atgcattagagagttgatgaatgattttagagtaagagaatgagggagaattatattgttaatgcaacaaaatt 16284544  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 20892401 - 20892343
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacac 255  Q
    |||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||    
T  20892401 atgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacac 20892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 14917434 - 14917377
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaaca 254  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  14917434 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaaca 14917377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 17720578 - 17720519
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  17720578 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 17720519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 42780325 - 42780388
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||||||| |||||| ||||||||||| ||||||||||| || ||| |||||||||||||||||    
T  42780325 atgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctt 42780388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 45120539 - 45120598
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| ||||    
T  45120539 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 45120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 30283502 - 30283439
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    ||||||||||| ||| ||||||||||| ||||||||||| || ||| || ||||||||||||||    
T  30283502 atgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacacccctt 30283439  T

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Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 3465410 - 3465589
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  3465410 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 3465509  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  3465510 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 3465589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 28574234 - 28574413
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  28574234 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 28574333  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  28574334 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 28574413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 28598246 - 28598425
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  28598246 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 28598345  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  28598346 cattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 28598425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 3468014 - 3468183
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||||||||||||    
T  3468014 tatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatgcattagagaa 3468113  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  3468114 ttgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaacaaaattctgtccaaat 3468183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 78 - 271
Target Start/End: Complemental strand, 17414740 - 17414546
Alignment:
Q  78 tattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaa 177  Q
    |||||| |||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||| ||||||  | |||||| ||||||||||||||    
T  17414740 tattttccagatttatggttccagcaattcactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaa 17414641  T
Q  178 caaaatt-gtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccccttagccacaggtt 271  Q
    |||||||  ||||||||| |||||||||||| ||||||||||||||| |||||||||| ||| ||| |||||||| ||||| || |||| |||||    
T  17414640 caaaattcatgtccaaattgatgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaaccacccatttgccaaaggtt 17414546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 10186845 - 10186668
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaaca----ttattttacagatttatggtaccaataattcactaatgc 115  Q
    |||| ||||||||| |||| |||||||||| || |||||||||||||| || |||||    |||||||||||||||||||| |||  |||||||| ||||    
T  10186845 gatactatgagttccttgacgtgtattgcacaaccacaccaaacgtatctcctaacaatatttattttacagatttatggttccagcaattcactcatgc 10186746  T
Q  116 attagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    |||||||||||||||||||||||||||||| ||||||  | |||||| ||||||||||||||||||||| ||||||||    
T  10186745 attagagaattgatggatgatttagagtaagagaatgatggagaattatgttgttaatgtaacaaaattctgtccaaa 10186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 1187765 - 1187933
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| ||||||||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| | |  |||||||| |||    
T  1187765 ttcatgatactatgagttccttgatgtgtattgcacaaccacaccaagcgtatctcctaacaatattttacagatttatggttctaccaattcactcatg 1187864  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||| ||||||||||||||||||||||||| ||||| ||| ||| || |||||||||||||||||||||    
T  1187865 cattaaagaattgatggatgatttagagtaagagaat-gaggagatttatgttgttaatgtaacaaaatt 1187933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 43358700 - 43358868
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| |||| |||||||||| || |||||||||| ||| || ||||| | ||||||||||||||||| |||  |||||||| |||||||||||||    
T  43358700 tatgagttccttgacgtgtattgcacaaccacaccaaacatatctcctaacaattttttacagatttatggttccagcaattcactcatgcattagagaa 43358799  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||| ||||||||||| ||||||  | |||||| |||||||||||||||||||||  |||||||    
T  43358800 ttgatggataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaattcagtccaaa 43358868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 16051143 - 16051397
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    ||||||||| ||||||||| ||||||||||||||| |  |||||||| |||||||| ||||| |||||||||||||||||||  ||  |||||||| |||    
T  16051143 ttcaagatactatgagttccttgatgtgtattgcacagccacaccaagcgtatttcctaacagtattttacagatttatggtttcagcaattcactcatg 16051242  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaag-aattgtgttgttaatgtaacaaaa------------ttgtgtccaaatcgatgcc 201  Q
    ||||||||||||||||||||||||| ||||| | ||||   ||| || || |  |||||||||||||||            ||||||||||||  |||||    
T  16051243 cattagagaattgatggatgatttaaagtaagaaaatgagtaagaaaatgag-ggttaatgtaacaaaattcttgttcttgttgtgtccaaattaatgcc 16051341  T
Q  202 caaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    |||||||||| ||||||||||| |||||||||| ||| ||| ||| ||||||||||    
T  16051342 caaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacaccc 16051397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 35626129 - 35626278
Alignment:
Q  35 ttgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatg 134  Q
    |||||||||  |||| || |||| | ||||||| || ||| | ||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  35626129 ttgatgtgtgatgcacaaccacatcgaacgtatctcctaatagtattttatagatttatggttccaacaattcactcatgcattagagaattgatggatg 35626228  T
Q  135 atttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    ||||||||||| ||||||  | |||||| |||||||||||||||||||||    
T  35626229 atttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatt 35626278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 44524276 - 44524110
Alignment:
Q  25 tatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattagagaa 124  Q
    ||||||||| ||||||||||||||| || ||||   | ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||||||||||||    
T  44524276 tatgagttccttgatgtgtattgcacaaccaca---agcgtatctcctaacagtattttacagatttatggttccagcaattcactcatgcattagagaa 44524180  T
Q  125 ttgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaat 194  Q
    ||||||||||||||| ||||| ||||||  | |||||| ||||||||||| ||||| ||| ||| |||||    
T  44524179 ttgatggatgatttaaagtaagagaatgatggagaattatgttgttaatgcaacaatattctgttcaaat 44524110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 13654272 - 13654452
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| |||||||||||||||||||  ||  |||||||| |||    
T  13654272 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggtttcagcaattcactcatg 13654371  T
Q  115 cattagagaattgatggatgattt--agagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    |||||||||||| |||||||||||  |||| || ||||||  | |||||| ||||||||||| ||||||||| | ||||||    
T  13654372 cattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatgcaacaaaattctatccaaa 13654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 19310767 - 19310939
Alignment:
Q  21 atattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcattag 120  Q
    ||||||||||||| |||| |||||||||| || | |||||| | ||| || ||| | | ||||||||||||||||| |||  |||||| | |||||||||    
T  19310767 atattatgagttccttgacgtgtattgcacaaccgcaccaagcatatctcctaatagtgttttacagatttatggttccagcaattcattcatgcattag 19310866  T
Q  121 agaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    ||||||||||||||||||| ||||| ||||||  | |||||| | ||||||||||||||||| | ||||||||    
T  19310867 agaattgatggatgatttatagtaagagaatgagggagaattatattgttaatgtaacaaaactctgtccaaa 19310939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 21431865 - 21431770
Alignment:
Q  89 tttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    |||||||| |||  |||||||| |||||||||||||||||||||||||||||| ||| ||||||  | |||||| ||||||||||| |||||||||    
T  21431865 tttatggttccatcaattcactgatgcattagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatgcaacaaaatt 21431770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 29681518 - 29681632
Alignment:
Q  6 caaattcctttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataat 105  Q
    ||||| ||||| | |||| |||||| || |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||    
T  29681518 caaatccctttgaggatactatgaggtccttgacgtgtattgcacaaccacaccaagcgtatctcctaacaatattttacagatttatggttccagcaat 29681617  T
Q  106 tcactaatgcattag 120  Q
    |||||||||||||||    
T  29681618 tcactaatgcattag 29681632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 48366313 - 48366213
Alignment:
Q  20 gatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatgcatta 119  Q
    |||| |||||| || |||| |||||||||| || |||||||| ||||| ||  |||| ||||||||||||||||||| |||  |||||||||||||||||    
T  48366313 gatactatgaggtccttgacgtgtattgcacaaccacaccaagcgtatctccaaacaatattttacagatttatggttccagcaattcactaatgcatta 48366214  T
Q  120 g 120  Q
    |    
T  48366213 g 48366213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 28574449 - 28574508
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  28574449 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 28598461 - 28598520
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  28598461 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28598520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 3696571 - 3696404
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    ||||||||| ||||| ||| ||||||||| |  || ||||||| |||| |||| |||||||  ||||||||| ||| ||||| |||  |||||| | ||     
T  3696571 ttcaagatactatgaattccttgatgtgttt--cacaatcacagcaaaagtatctcttaaccgtattttacaaatt-atggttccatcaattcattcatt 3696475  T
Q  115 cattagagaattgatggatgatttagagtaatagaa-tggagaagaattgtgttgttaatgtaacaaaatt 184  Q
    |   ||||||||||||||||||||| || |  |||| ||||  ||||||||||||||||||||||||||||    
T  3696474 ctgcagagaattgatggatgatttatagaatgagaaatggaagagaattgtgttgttaatgtaacaaaatt 3696404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 3468220 - 3468274
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaa 251  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||    
T  3468220 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 3468274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 21431734 - 21431673
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccc 258  Q
    ||||||||||||||||||||||||||| ||||||||||  || ||| |||||||| ||||||    
T  21431734 atgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcacccc 21431673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 3701548 - 3701476
Alignment:
Q  199 gcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccccttagccacaggtt 271  Q
    |||||||||||||| |||||||||| ||||| ||||| || ||| |||||||||||||| || |||| |||||    
T  3701548 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggtt 3701476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 10186646 - 10186573
Alignment:
Q  184 tgtgtccaaatcgatgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacaccc 257  Q
    ||||| |||||  ||||||||||||||| ||||||||||| ||||||||||  || ||| |||||||| |||||    
T  10186646 tgtgttcaaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcaccc 10186573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 19310965 - 19311028
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    ||||||||||||||| ||||||||||| |||| |||||  || ||| |||||||| ||||||||    
T  19310965 atgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctt 19311028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 43358895 - 43358949
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaa 251  Q
    ||||||||||| ||||||||||||||| |||||| |||| || ||| ||||||||    
T  43358895 atgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaa 43358949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 44524085 - 44524048
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgac 234  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  44524085 atgcccaaatgtcaaacatttatagtgcattatatgac 44524048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 13654468 - 13654524
Alignment:
Q  204 aatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||| |||| |||||||||| ||||||||||  || ||| |||||||||||||||||    
T  13654468 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctt 13654524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 2286 - 2109
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| ||||||||||||||||||| |||  |||||||| |||    
T  2286 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggttccagcaattcactcatg 2187  T
Q  115 cattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaa 192  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||||||| |||||| |||||||    
T  2186 cattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaataaaattctgtccaa 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 2071 - 2012
Alignment:
Q  197 atgcccaaatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacc 256  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||| |||||||||||||    
T  2071 atgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 144033 - 144213
Alignment:
Q  15 ttcaagatattatgagttcattgatgtgtattgcaaaatcacaccaaacgtatttcttaacattattttacagatttatggtaccaataattcactaatg 114  Q
    |||| |||| ||||||||| |||| |||||||||| || |||||||| ||||| || ||||| |||||||||||||||||||  ||  |||||||| |||    
T  144033 ttcaggatactatgagttccttgacgtgtattgcacaaccacaccaagcgtatctcctaacagtattttacagatttatggtttcagcaattcactcatg 144132  T
Q  115 cattagagaattgatggatgattt--agagtaatagaatggagaagaattgtgttgttaatgtaacaaaattgtgtccaaa 193  Q
    |||||||||||| |||||||||||  |||| || ||||||  | |||||| ||||||||||| ||||||||| | ||||||    
T  144133 cattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatgcaacaaaattctatccaaa 144213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 144229 - 144285
Alignment:
Q  204 aatgtcaagcatttatagtgtattatatgactattaacacgagagaaaacacccctt 260  Q
    |||| |||| |||||||||| ||||||||||  || ||| |||||||||||||||||    
T  144229 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctt 144285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 173352 - 173464
Alignment:
Q  72 taacattattttacagatttatggtaccaataattcactaatgcattagagaattgatggatgatttagagtaatagaatggagaagaattgtgttgtta 171  Q
    ||||| ||||||| ||||||||||| |||  |||||||  || ||||||||||||||||||||||||||||||| |||||   |||||||| |||||||     
T  173352 taacagtattttagagatttatggttccagcaattcacctatacattagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttg 173451  T
Q  172 atgtaacaaaatt 184  Q
    |||||||||||||    
T  173452 atgtaacaaaatt 173464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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