View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_52 (Length: 279)
Name: NF6277_high_52
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 25482722 - 25482969
Alignment:
| Q |
16 |
caggaaacgggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaaggg |
115 |
Q |
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| T |
25482722 |
caggaaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctattcatttttcatcaaataagataccaaaggg |
25482821 |
T |
|
| Q |
116 |
tgaccattttttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtg |
215 |
Q |
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||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25482822 |
tgaccatttattaatatgggtgaatgttttaaaa--aaaaaaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtg |
25482919 |
T |
|
| Q |
216 |
tcagatgtcacaggacgctcctcagcaagaagcgggtcagacgtcacagg |
265 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25482920 |
tcggatgtcacaggacgctcctcagcaagaagcgtgtcagacgtcacagg |
25482969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 25861313 - 25861066
Alignment:
| Q |
16 |
caggaaacgggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaaggg |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25861313 |
caggaaaagggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctattcatttttcatcaaataagataccaaaggg |
25861214 |
T |
|
| Q |
116 |
tgaccattttttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtg |
215 |
Q |
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||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25861213 |
tgaccatttattaatatgggtgaatgttttaaaa--aaaaaaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtg |
25861116 |
T |
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| Q |
216 |
tcagatgtcacaggacgctcctcagcaagaagcgggtcagacgtcacagg |
265 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25861115 |
tcggatgtcacaggacgctcctcagcaagaagcgtgtcagacgtcacagg |
25861066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 25885826 - 25885597
Alignment:
| Q |
16 |
caggaaacgggttgcaaaccggattggtcgtctcaagaggc---tcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaa |
112 |
Q |
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||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25885826 |
caggaaaagggttgcaaaccagattggtcgtctcaagaggcccctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagatgccaaa |
25885727 |
T |
|
| Q |
113 |
gggtgaccattttttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagc |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25885726 |
gggtgaccattttttaatatggatgaatgttttaaaaa-aaat-------aaggcacaaacttactttcagcaagaagcgggtcagacatcacaaaaagc |
25885635 |
T |
|
| Q |
213 |
gtgtcagatgtcacaggacgctcctcagcaagaagcgg |
250 |
Q |
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| ||||||||||||||||| || |||||||| |||||| |
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| T |
25885634 |
gagtcagatgtcacaggacacttctcagcaacaagcgg |
25885597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 25886763 - 25886565
Alignment:
| Q |
24 |
gggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaagggtgaccatt |
123 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25886763 |
gggttgcaaaccggattggtcgtctcaagagactcttcctctagcctcttagtaaatcctgttcatttttcatcaaataagataccaaagggtgaccatt |
25886664 |
T |
|
| Q |
124 |
tt-ttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtgtcagatg |
222 |
Q |
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|| ||||||||| ||||||||||| ||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
25886663 |
ttgttaatatggatgaatgttttataaaaaaat-------aaggcacaaacttactttcagcaagaaacgggtcagacatcacaaaaagcgtgccggatg |
25886571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 25604599 - 25604402
Alignment:
| Q |
24 |
gggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaagggtgaccatt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25604599 |
gggttgcaaaccggattggtcgtctcaagagactcttcctctagcctcttagtaattcctgttcatttttcatcaaataagataccaaagggtgaccatt |
25604500 |
T |
|
| Q |
124 |
tt-ttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtgtcagatg |
222 |
Q |
| |
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|| ||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||| | |||| |
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| T |
25604499 |
ttgttaatatggatgaatgttttaaaaa-aaat-------aaggcacaaacttactttcagcaagaaacgggtcagacgtcacaaaaagcgtgccggatg |
25604408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 25887051 - 25886817
Alignment:
| Q |
16 |
caggaaacgggttgcaaaccggattggtcgtctcaagaggctcttcctctac---------------cctcttagcaactcctgttcatttttcatcaaa |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25887051 |
caggaaaagggttgcaaaccggattggtcgtctcaagaagctcttcctctaagctctctactttttgcctcttagcaactcctgttcatttttcatcaaa |
25886952 |
T |
|
| Q |
101 |
taagataccaaagggtgaccattttttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcagac |
200 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
25886951 |
taagacaccaaagagtgacaattttttaatatggatgaatgttttaaaaa-aaat-------aaggcacaaacttactttcagcaagaaacgggtcagac |
25886860 |
T |
|
| Q |
201 |
atcacaaaaagcgtgtcagatgtcacaggacgctcctcagcaa |
243 |
Q |
| |
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||||||||||||| ||| ||||||| |||||||| |||||||| |
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| T |
25886859 |
atcacaaaaagcgagtcggatgtcagaggacgcttctcagcaa |
25886817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 25604888 - 25604653
Alignment:
| Q |
16 |
caggaaacgggttgcaaaccggattggtcgtctcaagaggctcttcctctac---------------cctcttagcaactcctgttcatttttcatcaaa |
100 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25604888 |
caggaaaagggttgcaaaccggattggttgtctcaagaggctcttcctctaagctctctactttttgcctcttagcaactcctgttcatttttcatcaaa |
25604789 |
T |
|
| Q |
101 |
taagataccaaagggtgaccatttt-ttaatatgggtgaatgttttaaaaataaataaataacaaggcagaaacttactttcagcaagaaatgggtcaga |
199 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||||| ||||||||||||||| |||| ||| || ||||||||||||||||||||| |||||||| |
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| T |
25604788 |
taagacaccaaagagtgaccattttgttaatatggatgaatgttttaaaaa-aaat-------aagacacaaacttactttcagcaagaaacgggtcaga |
25604697 |
T |
|
| Q |
200 |
catcacaaaaagcgtgtcagatgtcacaggacgctcctcagcaa |
243 |
Q |
| |
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|||||||||||||| ||| ||||||| |||||||| |||||||| |
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| T |
25604696 |
catcacaaaaagcgagtcggatgtcataggacgcttctcagcaa |
25604653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 25885550 - 25885425
Alignment:
| Q |
24 |
gggttgcaaaccggattggtcgtctcaagaggctcttcctctaccctcttagcaactcctgttcatttttcatcaaataagataccaaagggtgaccatt |
123 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25885550 |
gggttgcaaaccggataggtcgtctcaagagactcttcctctagcctcttagtaactccggttcatttttcatcaaataagataccaaagggtgaccatt |
25885451 |
T |
|
| Q |
124 |
tt-ttaatatgggtgaatgttttaaa |
148 |
Q |
| |
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|| ||||||||| ||||||||||||| |
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| T |
25885450 |
ttattaatatggatgaatgttttaaa |
25885425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 25884688 - 25884623
Alignment:
| Q |
163 |
aaggcagaaacttactttcagcaagaaatgggtcagacatcacaaaaagcgtgtcagatgtcacag |
228 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |
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| T |
25884688 |
aaggcataaacttactttcagcaagaaatgggtcagaaatcacaaaaagcgtgccggatgtcacag |
25884623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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