View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_6 (Length: 533)

Name: NF6277_high_6
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_6
NF6277_high_6
[»] chr2 (20 HSPs)
chr2 (296-493)||(41555232-41555430)
chr2 (107-224)||(41555043-41555160)
chr2 (13-106)||(41554921-41555014)
chr2 (356-435)||(30089047-30089126)
chr2 (356-435)||(30125651-30125730)
chr2 (364-435)||(11846403-11846471)
chr2 (484-533)||(41555831-41555880)
chr2 (364-415)||(7537116-7537167)
chr2 (364-435)||(23250304-23250375)
chr2 (356-435)||(32458114-32458193)
chr2 (364-423)||(32458308-32458367)
chr2 (363-417)||(3904207-3904261)
chr2 (364-434)||(19159947-19160017)
chr2 (357-435)||(20644003-20644081)
chr2 (358-404)||(25603926-25603972)
chr2 (363-417)||(30929047-30929101)
chr2 (348-394)||(37119283-37119329)
chr2 (355-392)||(40874099-40874136)
chr2 (368-416)||(27244667-27244715)
chr2 (356-428)||(29896285-29896357)
[»] chr6 (15 HSPs)
chr6 (356-435)||(8138442-8138521)
chr6 (361-426)||(26549165-26549230)
chr6 (356-394)||(19277572-19277610)
chr6 (382-435)||(5722834-5722887)
chr6 (356-391)||(2543357-2543392)
chr6 (364-435)||(29283821-29283892)
chr6 (356-394)||(3373406-3373444)
chr6 (364-417)||(13496122-13496175)
chr6 (364-417)||(21941461-21941514)
chr6 (25-69)||(6040640-6040684)
chr6 (356-404)||(12336341-12336389)
chr6 (14-54)||(13502901-13502941)
chr6 (356-392)||(14350947-14350983)
chr6 (364-392)||(18313939-18313967)
chr6 (363-435)||(29457186-29457258)
[»] chr8 (21 HSPs)
chr8 (363-433)||(29652223-29652293)
chr8 (356-435)||(6038259-6038338)
chr8 (368-435)||(574394-574461)
chr8 (348-393)||(69369-69414)
chr8 (355-435)||(3456806-3456885)
chr8 (356-416)||(3757960-3758020)
chr8 (13-69)||(14987958-14988014)
chr8 (356-435)||(8837918-8837996)
chr8 (368-435)||(27718878-27718945)
chr8 (368-435)||(28436531-28436598)
chr8 (363-404)||(1230676-1230717)
chr8 (363-404)||(13284280-13284321)
chr8 (13-70)||(14988125-14988182)
chr8 (364-417)||(31336809-31336862)
chr8 (364-404)||(11104770-11104810)
chr8 (363-435)||(15167055-15167126)
chr8 (356-400)||(16907577-16907621)
chr8 (355-435)||(29716684-29716764)
chr8 (356-404)||(30071531-30071579)
chr8 (368-435)||(34422379-34422447)
chr8 (356-392)||(44215816-44215852)
[»] chr5 (17 HSPs)
chr5 (350-435)||(4262523-4262608)
chr5 (356-435)||(13953703-13953782)
chr5 (349-435)||(8544973-8545059)
chr5 (351-416)||(36623177-36623242)
chr5 (363-435)||(37054253-37054325)
chr5 (356-435)||(7713530-7713608)
chr5 (364-435)||(13796336-13796407)
chr5 (363-417)||(13409555-13409609)
chr5 (349-435)||(16067642-16067728)
chr5 (355-392)||(9584596-9584633)
chr5 (363-434)||(11666008-11666081)
chr5 (356-433)||(12909152-12909229)
chr5 (364-401)||(22585658-22585695)
chr5 (356-389)||(28887108-28887141)
chr5 (368-428)||(15889421-15889481)
chr5 (369-425)||(30488936-30488992)
chr5 (13-49)||(39860302-39860338)
[»] chr7 (19 HSPs)
chr7 (356-416)||(24614693-24614753)
chr7 (355-394)||(1285094-1285133)
chr7 (364-428)||(36341056-36341120)
chr7 (356-435)||(42336068-42336147)
chr7 (350-417)||(43680992-43681059)
chr7 (371-433)||(2622338-2622400)
chr7 (13-70)||(13890183-13890240)
chr7 (363-392)||(19036443-19036472)
chr7 (363-392)||(20718164-20718193)
chr7 (356-405)||(21099787-21099836)
chr7 (364-428)||(21327532-21327597)
chr7 (368-405)||(43539118-43539155)
chr7 (368-417)||(45645238-45645287)
chr7 (364-404)||(15015247-15015287)
chr7 (355-435)||(16537520-16537600)
chr7 (355-435)||(16628062-16628142)
chr7 (356-436)||(27552504-27552583)
chr7 (358-394)||(31037668-31037704)
chr7 (364-428)||(33781472-33781536)
[»] scaffold0350 (1 HSPs)
scaffold0350 (356-435)||(1246-1325)
[»] chr3 (23 HSPs)
chr3 (356-423)||(48517669-48517736)
chr3 (356-435)||(7827506-7827585)
chr3 (356-435)||(7829894-7829973)
chr3 (368-435)||(10840428-10840494)
chr3 (355-435)||(20038003-20038083)
chr3 (364-408)||(38573584-38573628)
chr3 (364-435)||(7464475-7464546)
chr3 (364-435)||(10308102-10308173)
chr3 (380-435)||(32928572-32928627)
chr3 (364-435)||(49975789-49975860)
chr3 (358-428)||(48209202-48209272)
chr3 (357-394)||(12976627-12976664)
chr3 (365-406)||(38559909-38559950)
chr3 (364-425)||(41168132-41168193)
chr3 (364-404)||(7651192-7651232)
chr3 (350-434)||(9027373-9027457)
chr3 (355-391)||(20624239-20624275)
chr3 (355-434)||(26795983-26796063)
chr3 (344-404)||(28230205-28230265)
chr3 (356-404)||(29791774-29791822)
chr3 (364-392)||(36918899-36918927)
chr3 (364-404)||(39100431-39100471)
chr3 (358-394)||(54785259-54785295)
[»] chr1 (18 HSPs)
chr1 (356-417)||(44243871-44243932)
chr1 (351-423)||(23045184-23045256)
chr1 (356-435)||(5279354-5279433)
chr1 (364-417)||(32497483-32497536)
chr1 (367-435)||(16033434-16033502)
chr1 (351-435)||(45701321-45701405)
chr1 (364-435)||(30678797-30678868)
chr1 (356-435)||(48131212-48131291)
chr1 (364-406)||(4770641-4770683)
chr1 (369-435)||(32923829-32923895)
chr1 (358-435)||(46334775-46334852)
chr1 (357-394)||(25365021-25365058)
chr1 (364-417)||(46082342-46082395)
chr1 (351-392)||(48530827-48530868)
chr1 (364-404)||(3573339-3573379)
chr1 (364-404)||(10841906-10841946)
chr1 (364-392)||(20725950-20725978)
chr1 (364-428)||(32950752-32950816)
[»] chr4 (14 HSPs)
chr4 (344-435)||(18903742-18903833)
chr4 (364-435)||(50380820-50380891)
chr4 (357-435)||(25999396-25999474)
chr4 (382-435)||(47015552-47015605)
chr4 (364-428)||(21318244-21318308)
chr4 (356-428)||(22164260-22164332)
chr4 (350-417)||(7248328-7248395)
chr4 (364-434)||(14197416-14197486)
chr4 (357-435)||(18004464-18004542)
chr4 (356-394)||(51436631-51436669)
chr4 (352-394)||(55430590-55430632)
chr4 (382-435)||(3782349-3782402)
chr4 (356-404)||(874457-874505)
chr4 (350-394)||(18458744-18458788)
[»] scaffold0445 (1 HSPs)
scaffold0445 (364-413)||(4476-4525)
[»] scaffold0016 (1 HSPs)
scaffold0016 (367-435)||(99046-99114)
[»] scaffold0118 (1 HSPs)
scaffold0118 (359-405)||(44419-44465)
[»] scaffold1320 (1 HSPs)
scaffold1320 (363-435)||(1744-1815)
[»] scaffold0161 (1 HSPs)
scaffold0161 (364-416)||(26704-26756)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 296 - 493
Target Start/End: Original strand, 41555232 - 41555430
Alignment:
Q  296 gctaataaaaacgaaaagacaaacactttagttgaaattcaaaagttcgaacatttgttatcgtgaatttaactcagttgataggaacaatgcataatac 395  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  41555232 gctaataaaaatgaaaagacaaacactttagttaaaattcaaaagttcgaacatttgttctcgtgagtttaactcagttggtaggaacaatgcataatac 41555331  T
Q  396 atataaggtctagagttcaaacttcgaccaccataaaaaacg-ttcgaacattagtgagagtcttgacaacaacatcggacagtgtacaccaaaatgaa 493  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  41555332 atataaggtccaaagttcaaacttcgaccaccataaaaaacgtttcgaacattagtcagagtcttgacaacaccatcggacagtgtacaccaaaatgaa 41555430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 41555043 - 41555160
Alignment:
Q  107 ttgctgaactttttcttcaatttttaccctccataacaatagaattaacacccacaataatccaacaatattgtacattatnnnnnnncttattttgacc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  41555043 ttgctgaactttttcttcaatttttaccctccataacaatagaattaacacccacaataatccaacaatattgtacattataaaaaaacttattttgacc 41555142  T
Q  207 ggatataaataaatgtcg 224  Q
    ||||||||||||||||||    
T  41555143 ggatataaataaatgtcg 41555160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 41554921 - 41555014
Alignment:
Q  13 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaatcaaactnnnnnnncatatatattgtaataaatctgta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||    
T  41554921 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaatcaaaccaaaaaaacatatatattgtaataaatttgta 41555014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 30089047 - 30089126
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| ||| |||||||| |||| ||||||||||||| ||| ||||||  | |||||||| ||| |||||||||||||    
T  30089047 tcgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccaccataaaaaa 30089126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 30125651 - 30125730
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| ||| |||||||| |||| ||||||||||||| ||| ||||||  | |||||||| ||| |||||||||||||    
T  30125651 tcgtgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccaccataaaaaa 30125730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 11846403 - 11846471
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| |||||| ||| ||||||| ||| |||   |||||||||||||||| |||||||||||||    
T  11846403 ttaactcagttggtaggaataatacataatatatacaag---tagagttcaaacttcggccaccataaaaaa 11846471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 41555831 - 41555880
Alignment:
Q  484 ccaaaatgaatatatggccacacatgaaacaacagaaataagccaacttc 533  Q
    |||||||||||||||||||||||||||||||| ||| || |||| |||||    
T  41555831 ccaaaatgaatatatggccacacatgaaacaatagagattagcccacttc 41555880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 7537116 - 7537167
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaa 415  Q
    ||||||||||||||||||||||||||||||| ||  ||||||  ||||||||    
T  7537116 ttaactcagttgataggaacaatgcataatatatgcaaggtccggagttcaa 7537167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 23250375 - 23250304
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| || ||||||||||||||| ||  |||||| || ||||||||  ||||||||| ||||||    
T  23250375 ttaactcagttggtaagaacaatgcataatatatgcaaggtccagggttcaaaccccgaccaccacaaaaaa 23250304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 32458114 - 32458193
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| |||||||||||| || |||||||||| |||| || || ||||  |||||||||||  || ||||||||||||    
T  32458114 tcgtgaacttaactcagttggtatgaacaatgcacaatatatgtatggtccggagttcaaactctgatcaccataaaaaa 32458193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 32458308 - 32458367
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgac 423  Q
    ||||||||||||||| ||||||||||||||| ||  |||||| || ||||||||| ||||    
T  32458308 ttaactcagttgataagaacaatgcataatatatgcaaggtccagggttcaaactccgac 32458367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 3904207 - 3904261
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    ||||||| |||||||||| ||||||||||||| || |||||||| | ||||||||    
T  3904207 tttaacttagttgatagggacaatgcataatatatgtaaggtctggggttcaaac 3904261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 19159947 - 19160017
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaa 434  Q
    ||||||||||||||| ||||||||||||||| ||  |||||   ||||||||||| ||||| |||| ||||    
T  19159947 ttaactcagttgatatgaacaatgcataatatatgcaaggttcggagttcaaactccgaccgccatcaaaa 19160017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 20644003 - 20644081
Alignment:
Q  357 cgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||| |||||||| || ||| ||||||||||| || |||| ||    ||||||||| ||||||||||||||||    
T  20644003 cgtgaatttagctcagttggtaagaataatgcataatatatgtaagatccgacgttcaaactccgaccaccataaaaaa 20644081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 25603972 - 25603926
Alignment:
Q  358 gtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||| || |||||||||||||| ||||||||||||| |||||||||    
T  25603972 gtgaaattgactcagttgatagggacaatgcataatatatataaggt 25603926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 30929101 - 30929047
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||||||||||||||| | ||||||||||||| ||||||| |||| | |||||||    
T  30929101 tttaactcagttgatatggacaatgcataatatatataagatctaaaattcaaac 30929047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 394
Target Start/End: Complemental strand, 37119329 - 37119283
Alignment:
Q  348 atttgttatcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    |||||| || |||| |||||||||||||||| |||||||||||||||    
T  37119329 atttgtcattgtgagtttaactcagttgatatgaacaatgcataata 37119283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 40874136 - 40874099
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataa 392  Q
    |||||||||||||||||||||||| | |||||||||||    
T  40874136 atcgtgaatttaactcagttgatatggacaatgcataa 40874099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 416
Target Start/End: Original strand, 27244667 - 27244715
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaa 416  Q
    ||||||||||||| ||||||||||||| ||  ||||||||| |||||||    
T  27244667 ctcagttgatagggacaatgcataatatatgcaaggtctagggttcaaa 27244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 29896357 - 29896285
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||| ||||| ||||||||||| |||||||||||||| ||  ||||| | | ||||||||  |||||||||    
T  29896357 tcgtgagtttaattcagttgatagaaacaatgcataatatatgcaaggtttggggttcaaaccccgaccacca 29896285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 8138521 - 8138442
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||| ||||||||||| ||||||||||||||| || |||||||| | |||||||| || ||||||| ||||||    
T  8138521 tcgtgaatttagctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaacctcaaccaccacaaaaaa 8138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 26549230 - 26549165
Alignment:
Q  361 aatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccac 426  Q
    ||||||||||| ||| |||  ||| |||||||||||| |||||||| |||||||||||||||||||    
T  26549230 aatttaactcaattggtagagacattgcataatacatgtaaggtctggagttcaaacttcgaccac 26549165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 19277572 - 19277610
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  19277572 tcgtgaacttaactcagttgataggaacaatgcataata 19277610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 5722887 - 5722834
Alignment:
Q  382 acaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||||||||||| || | | ||||||||||||| ||||||||||||    
T  5722887 acaatgcataatacatataaagtttggggttcaaacttcgatcaccataaaaaa 5722834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 2543392 - 2543357
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcata 391  Q
    ||||||||||||||||||||||||||||||| ||||    
T  2543392 tcgtgaatttaactcagttgataggaacaatacata 2543357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 29283821 - 29283892
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| |||  |||||| |||||| ||  ||||||||| ||||||||| ||||||||| ||||||    
T  29283821 ttaactcagttggtagagacaatgtataatatatgcaaggtctagggttcaaactccgaccaccacaaaaaa 29283892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 3373444 - 3373406
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  3373444 tcgtgaatttaactcagttgatatggacaatgcataata 3373406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 13496122 - 13496175
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    ||||||||||||||| ||||||||||||||| ||  ||||||  ||||||||||    
T  13496122 ttaactcagttgatatgaacaatgcataatatatgcaaggtccggagttcaaac 13496175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 21941514 - 21941461
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    ||||||||||||||||| ||||||| ||||| || |||||||| ||||| ||||    
T  21941514 ttaactcagttgatagggacaatgcgtaatatatgtaaggtctggagtttaaac 21941461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 6040684 - 6040640
Alignment:
Q  25 ttaaaagcaactttgtttaagggtataactcaaacaatgaaaaat 69  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||    
T  6040684 ttaaaaacaaatttgtttaagggtataacttaaataatgaaaaat 6040640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 12336389 - 12336341
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||| |||||||||||| ||| | ||||||||||||| |||||||||    
T  12336389 tcgtgagtttaactcagttaatatggacaatgcataatatatataaggt 12336341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 13502901 - 13502941
Alignment:
Q  14 atataactttcttaaaagcaactttgtttaagggtataact 54  Q
    ||||||| ||||||||||||| |||||||||| ||||||||    
T  13502901 atataacattcttaaaagcaaatttgtttaagtgtataact 13502941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 14350947 - 14350983
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataa 392  Q
    |||||| |||||||||||||||| |||||||||||||    
T  14350947 tcgtgagtttaactcagttgatatgaacaatgcataa 14350983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Original strand, 18313939 - 18313967
Alignment:
Q  364 ttaactcagttgataggaacaatgcataa 392  Q
    |||||||||||||||||||||||||||||    
T  18313939 ttaactcagttgataggaacaatgcataa 18313967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 29457186 - 29457258
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| |||||||| |||||| ||||||||||| ||||||||| |   |||||||||||  |||||| ||||||    
T  29457186 tttagctcagttggtaggaaaaatgcataatatatataaggtttgtggttcaaacttcagccaccacaaaaaa 29457258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 29652223 - 29652293
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaa 433  Q
    |||| ||||||||||| ||||||||||||||| ||  |||||| ||||||||||| |||||||||||||||    
T  29652223 tttagctcagttgataagaacaatgcataatatatgcaaggtccagagttcaaacctcgaccaccataaaa 29652293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 6038338 - 6038259
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| ||| ||||||||||| | ||||||||||||| || |||||||| ||||||||||| || |||||| ||||||    
T  6038338 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccacaaaaaa 6038259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 574394 - 574461
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||   ||||||||||||| || |||||||  |||||| |||||||||||||||||||||    
T  574394 ctcagttgatatagacaatgcataatatatgtaaggtccggagttcgaacttcgaccaccataaaaaa 574461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 69369 - 69414
Alignment:
Q  348 atttgttatcgtgaatttaactcagttgataggaacaatgcataat 393  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||    
T  69369 atttgttctcgtgaatttaactcagttggtaggaataatgcataat 69414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 3456885 - 3456806
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||| |||||||| |||||| ||||||||||||||| || |||||| | | ||||||||||| |||| || ||||||    
T  3456885 atcgtgaacttaactcaattgatatgaacaatgcataatatatgtaaggt-tcgggttcaaacttcaaccatcacaaaaaa 3456806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 3758020 - 3757960
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaa 416  Q
    |||| |||||| ||||||||||||||||||||||||||| || |||| ||| | |||||||    
T  3758020 tcgtaaatttagctcagttgataggaacaatgcataatatatgtaagatctggggttcaaa 3757960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 14988014 - 14987958
Alignment:
Q  13 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaat 69  Q
    |||||||| |||||||||| || ||||||| ||||||||||| ||| ||||||||||    
T  14988014 aatataacattcttaaaagtaaatttgtttgagggtataactaaaataatgaaaaat 14987958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 8837918 - 8837996
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| ||||||| ||||||||| ||||||||||||| ||| ||||||  | ||||||| | |||||||| |||||||    
T  8837918 tcgtgaacttaactcggttgatagggacaatgcataatatatacaaggtc-cgggttcaaattccgaccaccgtaaaaaa 8837996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 27718945 - 27718878
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||| | ||||||||||||| ||  ||||||  ||||||||||| ||||||||| ||||||    
T  27718945 ctcagttgatatggacaatgcataatatatgcaaggtccggagttcaaactccgaccaccaaaaaaaa 27718878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 435
Target Start/End: Complemental strand, 28436598 - 28436531
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| ||||||  |||||||||||||| || ||| ||| | |||||||||| ||||||||||||||||    
T  28436598 ctcaattgatatcaacaatgcataatatatgtaaagtccaaagttcaaactccgaccaccataaaaaa 28436531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 1230717 - 1230676
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||||||||| |||||||||||||||||| || ||||||    
T  1230717 tttaactcagttggtaggaacaatgcataatatatgtaaggt 1230676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 13284321 - 13284280
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||||||||||||| |||||||| |||||| |||||||||    
T  13284321 tttaactcagttgatatgaacaatgtataatatatataaggt 13284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 14988182 - 14988125
Alignment:
Q  13 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaatc 70  Q
    |||||||| |||||||||  || |||||||||| ||||||||  ||||||||||||||    
T  14988182 aatataacattcttaaaaataaatttgtttaagagtataactggaacaatgaaaaatc 14988125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 31336862 - 31336809
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||| ||||||| |||||||||||||||||| ||  ||||||||| ||||||||    
T  31336862 ttaagtcagttggtaggaacaatgcataatatatgcaaggtctagggttcaaac 31336809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 11104770 - 11104810
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||||||||| |||||||||||||||||| ||| |||||    
T  11104770 ttaactcagttggtaggaacaatgcataatatatacaaggt 11104810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 435
Target Start/End: Original strand, 15167055 - 15167126
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| |||||||| |||||||||||||||||| | ||||||| ||| ||||||||  ||||||| | ||||||    
T  15167055 tttagctcagttggtaggaacaatgcataatatacataaggt-tagggttcaaaccccgaccacaaaaaaaaa 15167126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 16907577 - 16907621
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatata 400  Q
    |||||| |||||||||||||||  ||||||||||||||| |||||    
T  16907577 tcgtgagtttaactcagttgatttgaacaatgcataatatatata 16907621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 29716764 - 29716684
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||  |||||||||||| |||||||||| ||||||| ||  ||||||  |  |||||||| || |||||||||||||    
T  29716764 atcgtgagcttaactcagttggtaggaacaattcataatatatgcaaggtccgggattcaaactccggccaccataaaaaa 29716684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 30071579 - 30071531
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||| |||||| |||||||| ||||||||||||||| ||| |||||    
T  30071579 tcgtgaacttaacttagttgataagaacaatgcataatatatacaaggt 30071531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 34422379 - 34422447
Alignment:
Q  368 ctcagttgatag-gaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||  ||||||||||||||| ||||||  |  ||| |||||||| ||||||||||||||||    
T  34422379 ctcagttgataatgaacaatgcataatatatataaaattcagaattcaaactccgaccaccataaaaaa 34422447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 44215852 - 44215816
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataa 392  Q
    |||||| |||| |||||||||||||||||||||||||    
T  44215852 tcgtgagtttagctcagttgataggaacaatgcataa 44215816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 4262608 - 4262523
Alignment:
Q  350 ttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| ||  ||| |||||  |||||||| ||||||    
T  4262608 ttgttctcgtgaatttagctcagttgataagaacaatgtataatacatataaggtttaaggtttaaactctgaccaccacaaaaaa 4262523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 13953782 - 13953703
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||||||| |||||||| |||||| |||||| |  |||||| | | |||||||||||| |||||| ||||||    
T  13953782 tcgtgaatttaactcaattgataggtacaatgtataatatacgtaaggtttggggttcaaacttcggccaccacaaaaaa 13953703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 8545059 - 8544973
Alignment:
Q  349 tttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| ||||||  ||||||||||||||| | ||||||||||||| ||  ||||||  |||||| |||| ||||||||| ||||||    
T  8545059 tttgttctcgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtccggagttcgaactccgaccaccacaaaaaa 8544973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 416
Target Start/End: Complemental strand, 36623242 - 36623177
Alignment:
Q  351 tgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaa 416  Q
    |||| ||||||  ||||||||||||||| ||| ||||||||||| ||  |||||||||||||||||    
T  36623242 tgttctcgtgagcttaactcagttgataagaataatgcataatatatgcaaggtctagagttcaaa 36623177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 37054325 - 37054253
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| |||||||| |||| ||||||||||||| |||||||||   | ||||||||| ||||||||| ||||||    
T  37054325 tttagctcagttggtagggacaatgcataatatatataaggttcggggttcaaactccgaccaccacaaaaaa 37054253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 7713530 - 7713608
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||  ||||| | ||||||||||  ||||||||| ||||||    
T  7713530 tcgtgagtttaactcagttgatatgaataatgcataatatatgcaaggtttggagttcaaac-ccgaccaccacaaaaaa 7713608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 13796336 - 13796407
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||| |||| ||||||||||||||| ||  ||||||| | || |||||| ||||||||| ||||||    
T  13796336 ttaactcagtcgatatgaacaatgcataatatatgcaaggtctggggtacaaactccgaccaccacaaaaaa 13796407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 417
Target Start/End: Original strand, 13409555 - 13409609
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||| ||||||||||| ||||||||||||||| ||| ||||||  ||||||||||    
T  13409555 tttagctcagttgataagaacaatgcataatatatacaaggtccggagttcaaac 13409609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 16067642 - 16067728
Alignment:
Q  349 tttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| ||||||  ||| || |||||||||||||||||||||||| ||  | ||||||| |||||||| || ||||| | ||||||    
T  16067642 tttgttttcgtgagcttatcttagttgataggaacaatgcataatatatgcatggtctagggttcaaacctcaaccacaaaaaaaaa 16067728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 9584596 - 9584633
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataa 392  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  9584596 atcgtgagtttaactcagttgattggaacaatgcataa 9584633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 11666008 - 11666081
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtct-aga-gttcaaacttcgaccaccataaaaa 434  Q
    ||||| ||||||| ||| |||||||||||||| ||||||| ||| ||| ||||||| ||| |||||||||||||    
T  11666008 tttaattcagttggtagaaacaatgcataatatatataagatctgagaggttcaaatttcaaccaccataaaaa 11666081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 433
Target Start/End: Complemental strand, 12909229 - 12909152
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaa 433  Q
    ||||||||||| |||||||| || ||||||||||||||| || ||||||  || ||| |||| | | |||||||||||    
T  12909229 tcgtgaatttagctcagttggtatgaacaatgcataatatatgtaaggttcagggtttaaaccttggccaccataaaa 12909152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 22585658 - 22585695
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataa 401  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  22585658 ttaactcagttgatatgaacaatgcataatatatataa 22585695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 28887108 - 28887141
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgca 389  Q
    |||||| |||||||||||||||||||||||||||    
T  28887108 tcgtgagtttaactcagttgataggaacaatgca 28887141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 428
Target Start/End: Original strand, 15889421 - 15889481
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||||| |||| ||||||||||||| ||  ||||||||| ||||||||  |||||||||    
T  15889421 ctcagttggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccacca 15889481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 30488936 - 30488992
Alignment:
Q  369 tcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgacca 425  Q
    |||||||||| ||||||||||||||| ||| ||||| | | ||||||||| ||||||    
T  30488936 tcagttgatatgaacaatgcataatatatacaaggtttggggttcaaactccgacca 30488992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 39860302 - 39860338
Alignment:
Q  13 aatataactttcttaaaagcaactttgtttaagggta 49  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  39860302 aatataaatttcttaaaagcaaatttgtttaagggta 39860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 416
Target Start/End: Original strand, 24614693 - 24614753
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaa 416  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||| |||| |||||||||    
T  24614693 tcgtgagtttaactcagttgataggaataatgcataatatatataatgtctggagttcaaa 24614753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 1285133 - 1285094
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  1285133 atcgtgagtttaactcagttgataggaacaatgcataata 1285094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 36341120 - 36341056
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||||||||| || ||||||||||||| | ||| ||||||  |||||||||| ||||||||||    
T  36341120 ttaactcagttggtatgaacaatgcataaaatatacaaggtccggagttcaaacctcgaccacca 36341056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 42336068 - 42336147
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||| ||||||||||| | ||||||||||||||||  ||||||  | |||| ||  |||||||||| ||||||    
T  42336068 tcgtgaatttagctcagttgataaggacaatgcataatacatgcaaggtccggggttcgaatctcgaccaccaaaaaaaa 42336147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 417
Target Start/End: Complemental strand, 43681059 - 43680992
Alignment:
Q  350 ttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||| ||||||| ||||||||||||||| || ||||||||||| | ||  ||||||||| ||||||||    
T  43681059 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaac 43680992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 433
Target Start/End: Original strand, 2622338 - 2622400
Alignment:
Q  371 agttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaa 433  Q
    |||||||||||||||| ||||||| || |||| | ||||||||||||  || |||||||||||    
T  2622338 agttgataggaacaatacataatatatgtaagatttagagttcaaaccccggccaccataaaa 2622400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 13890240 - 13890183
Alignment:
Q  13 aatataactttcttaaaagcaactttgtttaagggtataactcaaacaatgaaaaatc 70  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||  |||||| |||||||    
T  13890240 aatataacattcttaaaagcaagtttatttaaggatataactagaacaataaaaaatc 13890183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Complemental strand, 19036472 - 19036443
Alignment:
Q  363 tttaactcagttgataggaacaatgcataa 392  Q
    ||||||||||||||||||||||||||||||    
T  19036472 tttaactcagttgataggaacaatgcataa 19036443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Original strand, 20718164 - 20718193
Alignment:
Q  363 tttaactcagttgataggaacaatgcataa 392  Q
    ||||||||||||||||||||||||||||||    
T  20718164 tttaactcagttgataggaacaatgcataa 20718193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 21099836 - 21099787
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtc 405  Q
    ||||||||||| |||||||| || | ||||||||||||| ||||||||||    
T  21099836 tcgtgaatttagctcagttggtatggacaatgcataatatatataaggtc 21099787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 21327597 - 21327532
Alignment:
Q  364 ttaactcagttgataggaacaatgc-ataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    ||||||||||||||||||||||||| |||||| ||  ||||| | | ||||||||| |||||||||    
T  21327597 ttaactcagttgataggaacaatgcaataatatatgcaaggtttggggttcaaactccgaccacca 21327532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 43539155 - 43539118
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtc 405  Q
    ||||||||||||||||||||||||||| || |||||||    
T  43539155 ctcagttgataggaacaatgcataatatatgtaaggtc 43539118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 45645287 - 45645238
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    ||||||||||| ||||||| ||||||| || ||||||||| |||||||||    
T  45645287 ctcagttgataagaacaatacataatatatgtaaggtctaaagttcaaac 45645238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 15015247 - 15015287
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||||||||||| ||||||||||||||| || ||||||    
T  15015247 ttaactcagttgataagaacaatgcataatatatgtaaggt 15015287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 16537600 - 16537520
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| |||| |||||||| |||| | ||||||||||| ||| ||||||| | |||||||| |||  ||||| ||||||    
T  16537600 atcgtgagtttagctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccacaaaaaa 16537520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 435
Target Start/End: Original strand, 16628062 - 16628142
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| |||| |||||||| |||| | ||||||||||| ||| ||||||| | |||||||| |||  ||||| ||||||    
T  16628062 atcgtgagtttagctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccacaaaaaa 16628142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 27552583 - 27552504
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaac 436  Q
    |||||||||||||| | |||||| ||||||| ||||||| || ||||| ||   ||||||| ||||||||||| |||||||    
T  27552583 tcgtgaatttaacttaattgataagaacaatccataatatatgtaagg-ctgaggttcaaatttcgaccaccacaaaaaac 27552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 31037704 - 31037668
Alignment:
Q  358 gtgaatttaactcagttgataggaacaatgcataata 394  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  31037704 gtgagtttaactcagttggtaggaacaatgcataata 31037668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 33781536 - 33781472
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    ||||||||||||||||| ||||||||||||  ||  ||||| | || |||||||| |||||||||    
T  33781536 ttaactcagttgatagggacaatgcataatttatgcaaggtatcgatttcaaactccgaccacca 33781472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 1246 - 1325
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| ||| ||||||||||| | ||||||||||||| || |||||||| ||||||||||| || |||||| ||||||    
T  1246 tcgtgaacttagctcagttgatatggacaatgcataatatatgtaaggtctggagttcaaactccggccaccacaaaaaa 1325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 48517669 - 48517736
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgac 423  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |||||   ||||||||||| ||||    
T  48517669 tcgtgagtttaactcagttgataggaacaatgcataatatatacaaggttcggagttcaaactccgac 48517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 7827506 - 7827585
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| |||||||||||||||| | ||||||||||||| || |||||||| |||||| ||   ||||||||| ||||||    
T  7827506 tcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctggagttcgaaacccgaccaccacaaaaaa 7827585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 7829894 - 7829973
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| |||||||||||||||| | ||||||||||||| || ||||||||  ||||| || | ||||||||| ||||||    
T  7829894 tcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctgaagttcgaaatccgaccaccacaaaaaa 7829973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 435
Target Start/End: Original strand, 10840428 - 10840494
Alignment:
Q  368 ctcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||| || ||||||||||||||| ||  ||||| | ||||||||||||||||||||||||||||    
T  10840428 ctcagttggtatgaacaatgcataatatatg-aaggtttggagttcaaacttcgaccaccataaaaaa 10840494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 20038083 - 20038003
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| |||||||| ||||||||||||||| ||||||  ||||||||| ||  ||||||||  || |||||| ||||||    
T  20038083 atcgtgagtttaactcggttgataggaacaatacataatgtatataaggtataaggttcaaaccccggccaccacaaaaaa 20038003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 38573628 - 38573584
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctag 408  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||||    
T  38573628 ttaactcagttgataagaacaatgcataatatatacaaggtctag 38573584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 7464546 - 7464475
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| |||| ||||||||||||| || |||||||  | ||||||||  ||||||||| ||||||    
T  7464546 ttaactcagttggtagggacaatgcataatatatgtaaggtccggggttcaaaccccgaccaccacaaaaaa 7464475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Original strand, 10308102 - 10308173
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||||||||||||| |||||| | ||  ||| ||| | |||||||| |||| ||||||||||||    
T  10308102 ttaactcagttgataggaacaaagcataacatatgcaagttctggggttcaaacctcgatcaccataaaaaa 10308173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 435
Target Start/End: Complemental strand, 32928627 - 32928572
Alignment:
Q  380 gaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||||||| ||||||| ||| ||||||||||  ||||||||| ||||||    
T  32928627 gaacaatgcataatatatataagatctggagttcaaaccccgaccaccacaaaaaa 32928572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 49975860 - 49975789
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| || | ||||||||||||| ||  ||||||| | ||||||||||| ||||||| ||||||    
T  49975860 ttaactcagttgttatggacaatgcataatatatgcaaggtctggggttcaaacttcaaccaccacaaaaaa 49975789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 48209272 - 48209202
Alignment:
Q  358 gtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||| |||| ||||||||||||| ||||| ||||||| |||||||||  || ||||||||  |||||||||    
T  48209272 gtgagtttagctcagttgatagggacaatacataatatatataaggttcagggttcaaaccccgaccacca 48209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 12976664 - 12976627
Alignment:
Q  357 cgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  12976664 cgtgagtttaactcagttgatagggacaatgcataata 12976627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 38559950 - 38559909
Alignment:
Q  365 taactcagttgataggaacaatgcataatacatataaggtct 406  Q
    ||||||||||| || ||||||||||||||| |||||||||||    
T  38559950 taactcagttggtatgaacaatgcataatatatataaggtct 38559909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 425
Target Start/End: Complemental strand, 41168193 - 41168132
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgacca 425  Q
    ||||||| ||||||||||||||||||||||| ||| ||| || |  ||||||||| ||||||    
T  41168193 ttaactcggttgataggaacaatgcataatatatacaagctccaaggttcaaactccgacca 41168132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 7651192 - 7651232
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  7651192 ttaactcagttgatagggacaatgcatagtatatataaggt 7651232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 9027457 - 9027373
Alignment:
Q  350 ttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaa 434  Q
    |||| ||||||||||||||| ||||| | |  ||||||||||||| ||||||||| |   ||| |||||||| |||||| |||||    
T  9027457 ttgtcatcgtgaatttaacttagttgctggagacaatgcataatatatataaggtttgaggtttaaacttcggccaccacaaaaa 9027373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 20624239 - 20624275
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcata 391  Q
    |||||||||||| |||||||| |||||||||||||||    
T  20624239 atcgtgaatttatctcagttggtaggaacaatgcata 20624275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 26796063 - 26795983
Alignment:
Q  355 atcgtgaatttaactcagttgataggaacaatgcata-atacatataaggtctagagttcaaacttcgaccaccataaaaa 434  Q
    |||||||| |||  ||||||||||||||||||  ||| ||| |||||| ||| ||| |||||||| |||||| ||||||||    
T  26796063 atcgtgaacttatgtcagttgataggaacaatatatatatatatataacgtccagaattcaaactccgaccatcataaaaa 26795983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 28230265 - 28230205
Alignment:
Q  344 gaacatttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||||| | ||||||| |||||||||||| |||| || |||| |||||| |||||||||    
T  28230265 gaacatttatcatcgtgagtttaactcagttaatagaaataatgtataatatatataaggt 28230205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 29791774 - 29791822
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||| ||||||||||||||||| |||||| ||||||| || ||||||    
T  29791774 tcgtgagtttaactcagttgatagaaacaatacataatatatgtaaggt 29791822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Complemental strand, 36918927 - 36918899
Alignment:
Q  364 ttaactcagttgataggaacaatgcataa 392  Q
    |||||||||||||||||||||||||||||    
T  36918927 ttaactcagttgataggaacaatgcataa 36918899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 39100471 - 39100431
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||||||||||| ||||||||||||||| ||| |||||    
T  39100471 ttaactcagttgataagaacaatgcataatatatacaaggt 39100431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 54785259 - 54785295
Alignment:
Q  358 gtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  54785259 gtgaatttaactcagttgataagaacagtgcataata 54785295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 44243871 - 44243932
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||||| |||| |||||||| |||||||||||||||||| || ||||||| |||||||||||    
T  44243871 tcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtccagagttcaaac 44243932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 23045184 - 23045256
Alignment:
Q  351 tgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgac 423  Q
    |||||||||||  ||||||| ||| ||| ||||||||||||||| || |||||||  ||||||||||||||||    
T  23045184 tgttatcgtgagcttaactccgttaatatgaacaatgcataatatatgtaaggtccggagttcaaacttcgac 23045256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 5279433 - 5279354
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| ||||||||||| | || | ||||||||||||| ||  || |||| |||||||||| |||||||||||||||||    
T  5279433 tcgtgagtttaactcagtcggtatggacaatgcataatatatgcaatgtctggagttcaaacctcgaccaccataaaaaa 5279354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 32497536 - 32497483
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||||||||||| |||||||||||||||||| ||  ||||||||| ||||||||    
T  32497536 ttaactcagttggtaggaacaatgcataatatatgcaaggtctagggttcaaac 32497483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 16033502 - 16033434
Alignment:
Q  367 actcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||||| ||||||||||||| ||  ||||||| | ||||||||| || |||||| ||||||    
T  16033502 actcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccacaaaaaa 16033434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 45701321 - 45701405
Alignment:
Q  351 tgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| |||||| |||| |||||||| || ||||||||||||| | || |||||||| |||||| || | ||||||||| ||||||    
T  45701321 tgttttcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaaggtctggagttcgaattccgaccaccacaaaaaa 45701405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 30678868 - 30678797
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||| |||| ||||||||||||| || ||||||  |  |||||||||||| |||||| ||||||    
T  30678868 ttaactcagttggtagggacaatgcataatatatgtaaggttcatggttcaaacttcggccaccacaaaaaa 30678797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 48131291 - 48131212
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| |||||||||||||  ||  | ||||||||||| || |||||||| |||||||||||  |||||||| ||||||    
T  48131291 tcgtgagtttaactcagttggcagagataatgcataatatatgtaaggtctggagttcaaactctgaccaccacaaaaaa 48131212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 406
Target Start/End: Complemental strand, 4770683 - 4770641
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtct 406  Q
    ||||||||||||||| ||||||||||| ||| |||||||||||    
T  4770683 ttaactcagttgatatgaacaatgcatgatatatataaggtct 4770641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 32923829 - 32923895
Alignment:
Q  369 tcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||| |||| ||||||||||||| ||  |||||||  |||||||||| ||||||||| ||||||    
T  32923829 tcagttggtagggacaatgcataatatatgaaaggtctgaagttcaaactccgaccaccacaaaaaa 32923895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 435
Target Start/End: Original strand, 46334775 - 46334852
Alignment:
Q  358 gtgaatttaactcagttgataggaacaatgcataatacatataaggtct-agagttcaaacttcgaccaccataaaaaa 435  Q
    ||||| ||||||||||||||| ||||||||||||| | ||| ||||||| ||| |||||||  ||| ||||||||||||    
T  46334775 gtgaacttaactcagttgataagaacaatgcataaaatatacaaggtctgaga-ttcaaaccccgatcaccataaaaaa 46334852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 25365058 - 25365021
Alignment:
Q  357 cgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||||||||||||||| || |||||||||||||||    
T  25365058 cgtgaatttaactcagttggtaagaacaatgcataata 25365021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 417
Target Start/End: Original strand, 46082342 - 46082395
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    ||||||||||||| ||||||||||||||||| || |||||| | || |||||||    
T  46082342 ttaactcagttgaaaggaacaatgcataatatatgtaaggtttggaattcaaac 46082395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 48530868 - 48530827
Alignment:
Q  351 tgttatcgtgaatttaactcagttgataggaacaatgcataa 392  Q
    |||| |||||| |||||||||||||| |||||||||||||||    
T  48530868 tgttctcgtgagtttaactcagttgaaaggaacaatgcataa 48530827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 3573379 - 3573339
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    |||||||||||| |||||||||||||||||| || ||||||    
T  3573379 ttaactcagttggtaggaacaatgcataatatatgtaaggt 3573339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 10841906 - 10841946
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||||||||||| | ||||||||||||| |||||||||    
T  10841906 ttaactcagttgatatggacaatgcataatatatataaggt 10841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Original strand, 20725950 - 20725978
Alignment:
Q  364 ttaactcagttgataggaacaatgcataa 392  Q
    |||||||||||||||||||||||||||||    
T  20725950 ttaactcagttgataggaacaatgcataa 20725978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 32950816 - 32950752
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||||||||| ||  |||||||||||||| ||  ||||||  |||||||||| ||||||||||    
T  32950816 ttaactcagttggtataaacaatgcataatatatgcaaggtccggagttcaaacctcgaccacca 32950752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 435
Target Start/End: Complemental strand, 18903833 - 18903742
Alignment:
Q  344 gaacatttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||| |||||| |||| |||||||||||  || ||||||||||| || |||||||| | ||||||||   |||||||| ||||||    
T  18903833 gaacatttgttctcgtgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaaccctgaccaccacaaaaaa 18903742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 50380891 - 50380820
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| ||||||| || ||||||||||||||| || |||||||  |||||||||  |||||||||||||||||    
T  50380891 ttaattcagttggtatgaacaatgcataatatatgtaaggtccggagttcaaatctcgaccaccataaaaaa 50380820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 25999396 - 25999474
Alignment:
Q  357 cgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||| ||| |||||||| |||| ||||||||||||| |||||||||   ||||||||||| ||||||| | ||||||    
T  25999396 cgtgaacttagctcagttggtagggacaatgcataatatatataaggttccgagttcaaactccgaccacaaaaaaaaa 25999474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 47015605 - 47015552
Alignment:
Q  382 acaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||    
T  47015605 acaatgcataatatatacaaggtctggggttcaaactccgaccaccataaaaaa 47015552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 21318308 - 21318244
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||||||||| |||| ||||||||||||| ||  ||||||||| ||||||||  |||||||||    
T  21318308 ttaactcagttggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccacca 21318244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 22164332 - 22164260
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccacca 428  Q
    |||||| |||| || ||||| |||||||||||||||||| || |||||||| | ||||||||  |||||||||    
T  22164332 tcgtgagtttagcttagttggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 7248328 - 7248395
Alignment:
Q  350 ttgttatcgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaac 417  Q
    |||| ||||||| ||||||||||||||| || ||||||||||| | ||  ||||||||| ||||||||    
T  7248328 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaac 7248395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 14197486 - 14197416
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaa 434  Q
    |||||||||||| |||| ||||||||||||| || |||| ||  | |||||||| || |||||||||||||    
T  14197486 ttaactcagttggtagggacaatgcataatatatgtaagatccggggttcaaacctcaaccaccataaaaa 14197416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 18004464 - 18004542
Alignment:
Q  357 cgtgaatttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||| |||||||| || ||| ||||||||||| || |||| ||    ||||||||| ||||||||||||||||    
T  18004464 cgtgaatttagctcagttggtaagaataatgcataatatatgtaagatccgacgttcaaactccgaccaccataaaaaa 18004542  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 51436669 - 51436631
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  51436669 tcgtgaacttaactcagttgatacgaacaatgcataata 51436631  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 394
Target Start/End: Original strand, 55430590 - 55430632
Alignment:
Q  352 gttatcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    |||||||||| ||||||||||||| |||||| |||||||||||    
T  55430590 gttatcgtgagtttaactcagttggtaggaataatgcataata 55430632  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 3782402 - 3782349
Alignment:
Q  382 acaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    ||||||||||||| || |||| |||||||||| ||| |||||||||| ||||||    
T  3782402 acaatgcataatatatgtaagatctagagttcgaacatcgaccaccacaaaaaa 3782349  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 874457 - 874505
Alignment:
Q  356 tcgtgaatttaactcagttgataggaacaatgcataatacatataaggt 404  Q
    ||||||| |||||| |||||||| | ||||||||||||| |||||||||    
T  874457 tcgtgaacttaacttagttgatatggacaatgcataatatatataaggt 874505  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 18458744 - 18458788
Alignment:
Q  350 ttgttatcgtgaatttaactcagttgataggaacaatgcataata 394  Q
    ||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  18458744 ttgttctcgtgagtttaactcagttggtagaaacaatgcataata 18458788  T

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Target: scaffold0445 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 4476 - 4525
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttc 413  Q
    |||||| |||||||||||| ||||||||||| || |||||||||||||||    
T  4476 ttaactaagttgataggaataatgcataatatatgtaaggtctagagttc 4525  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 99046 - 99114
Alignment:
Q  367 actcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||||||||||||| ||||||||||||| ||  ||||||| | ||||||||| |||| |||| ||||||    
T  99046 actcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccgacaaccacaaaaaa 99114  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 44419 - 44465
Alignment:
Q  359 tgaatttaactcagttgataggaacaatgcataatacatataaggtc 405  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||||    
T  44419 tgaatttaactcagttggtaaaaacaatgcataatacatgtaaggtc 44465  T

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Target: scaffold1320 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 1815 - 1744
Alignment:
Q  363 tttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaacttcgaccaccataaaaaa 435  Q
    |||| |||||||| |||||||||||||||||| | ||||||| ||| ||||||||  ||||||| | ||||||    
T  1815 tttagctcagttggtaggaacaatgcataatatacataaggt-tagggttcaaaccccgaccacaaaaaaaaa 1744  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 26704 - 26756
Alignment:
Q  364 ttaactcagttgataggaacaatgcataatacatataaggtctagagttcaaa 416  Q
    |||||||||||| |||| | ||||||||||| ||||||||| || ||||||||    
T  26704 ttaactcagttgttagggataatgcataatatatataaggtttaaagttcaaa 26756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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