View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_62 (Length: 261)
Name: NF6277_high_62
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 9079670 - 9079440
Alignment:
| Q |
18 |
gaaggaagttttgctaaggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaata |
117 |
Q |
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| T |
9079670 |
gaaggaagttttgctaaggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaata |
9079571 |
T |
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| Q |
118 |
tgatggatcaggtacaattttatttgttatggattatcttattcgctatcagttataaattcaaattcatctgttgtgataaaattcattagttatccgt |
217 |
Q |
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| T |
9079570 |
tgatggatcaggtacaatcttatctgttatcgattatattattcg---tcagttataaattcaaattcattcattgcgatagaatttatcagttatccga |
9079474 |
T |
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| Q |
218 |
tannnnnnnacgacgctgatctttggtttttctt |
251 |
Q |
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| T |
9079473 |
tatttttttacgacactgatctttggtttttctt |
9079440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 9088447 - 9088217
Alignment:
| Q |
18 |
gaaggaagttttgctaaggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9088447 |
gaaggaagttttgctaaggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaata |
9088348 |
T |
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| Q |
118 |
tgatggatcaggtacaattttatttgttatggattatcttattcgctatcagttataaattcaaattcatctgttgtgataaaattcattagttatccgt |
217 |
Q |
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| T |
9088347 |
tgatggatcaggtacaatcttatctgttatcgattatattattcg---tcagttataaattcaaattcattcattgcgatagaatttatcagttatccga |
9088251 |
T |
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| Q |
218 |
tannnnnnnacgacgctgatctttggtttttctt |
251 |
Q |
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| T |
9088250 |
tatttttttacgacactgatctttggtttttctt |
9088217 |
T |
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Back To:
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