View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_65 (Length: 258)
Name: NF6277_high_65
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_65 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 53128437 - 53128679
Alignment:
| Q |
1 |
atgcaataaaaatcaacaggagtggcaaaatcaagagaaagaagtggaaactgatgttggctttgtgcactgtttgcttgaagtttatataagatggaac |
100 |
Q |
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| T |
53128437 |
atgcaataaaaatcaacaggagtggcaaaatcaagagaaagaagtggaaactgatgttggctttgtgcactgtttgtttgaagtttatataagatggaac |
53128536 |
T |
|
| Q |
101 |
aaatagcaaaaacatcacaatcccaactatggatactagttgcaaaggaggcgacttcaaaggccacgcca-nnnnnnnncctccaatgctctatgctac |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53128537 |
aaatagcaaaaacatcacaatcccaactatagatactagttgcaaaggaggcgacttcaaaggccacgccatttttttttcctccaatgctctatgctac |
53128636 |
T |
|
| Q |
200 |
tagcttgttaatttcctataatttatataatacatgagaaaga |
242 |
Q |
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| T |
53128637 |
tagcttgttaatttcctataatttatataatacatgagaaaga |
53128679 |
T |
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