View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_73 (Length: 251)

Name: NF6277_high_73

Description: NF6277

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6277_high_73

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 237; E-Value: 1e-131

Query Start/End: Original strand, 11 - 251

Target Start/End: Original strand, 15401928 - 15402168

Alignment:

Q	11	aagaatatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc	110	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15401928	aagaaaatgtaacacgcaagttttatgaataatgaacacttagcaccaaggttttaaattggtggaagtcatgtgacggttcttgacattgaggagaatc	15402027	T

Q	111	acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15402028	acgatcaaatgcagctgacgcagactcaatcgtattcacattgcaatttgcaatgaattctcttttatcaaaacctggtctgacacctttattaatacaa	15402127	T

Q	211	tttactttgttattgttttttagtaatttactctaaactct	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15402128	tttactttgttattgttttttagtaatttactctaaactct	15402168	T

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Target: chr5; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 143 - 189

Target Start/End: Original strand, 15400123 - 15400169

Alignment:

Q	143	tattcacattgcaatttgcaatgaattctcttttatcaaaacctggt	189	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	15400123	tattcacattgcaatttgcaatgaaatatctcttattaaaacctggt	15400169	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]