View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_80 (Length: 245)
Name: NF6277_high_80
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4685559 - 4685799
Alignment:
| Q |
1 |
tctaacaggtttatttacttcaaaccagaatttcaaagacttcatatgcactcaaatttttaatgacacattcacaaaaagaagcctaagtaaacttgtg |
100 |
Q |
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| T |
4685559 |
tctaacaggtttatttacttcaaaccagaatttcaaagacttcatatgcactcaaatttttaatgacacattcacaaaaagaagcctaagtaaacttgtg |
4685658 |
T |
|
| Q |
101 |
tcatgttaatgtgccacaagaactacaaatcttatgtattaatgttccaagtcgtaggaaagcatgtacttgtgtcattgcttaaaatgatgaaagtaaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4685659 |
tcatgttgatgtgccacaagaactacaaatcttatgta-taatgttccaagtcgtaggaaagcatgtacttgtgtcattgcataaaatgatgaaagtaaa |
4685757 |
T |
|
| Q |
201 |
gaacccttgaatttaacacataaaaggacctatctcctatga |
242 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4685758 |
gaacccttgaatttaacacataaaaggacctatcacctatga |
4685799 |
T |
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