View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_high_82 (Length: 244)
Name: NF6277_high_82
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_high_82 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 43583314 - 43583539
Alignment:
| Q |
18 |
gctagcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatc |
117 |
Q |
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| T |
43583314 |
gctagcaatgtcacaaagcttctcaatgaacttctccctcaccaaagggaggatgctgtgaactcccttgcttatgaagccgaagcacgagttagggatc |
43583413 |
T |
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| Q |
118 |
cagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgccaacaccgatcttcttcgctattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43583414 |
cagtttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgctaacaccgatcttcttcgctattc |
43583513 |
T |
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| Q |
218 |
cctcgctgatatctctgctcctcctc |
243 |
Q |
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| T |
43583514 |
cctcgctgatatctctccacctcctc |
43583539 |
T |
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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 34675328 - 34675520
Alignment:
| Q |
21 |
agcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgcttacgaagccgaagcacgagttagggatccag |
120 |
Q |
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||||| ||||||||| | ||||| ||||||||||||||||| || || ||||| ||||| ||||||||||| |||||||| ||||| || || ||||| | |
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| T |
34675328 |
agcaacgtcacaaagatcctcaacgaactcctccctcaccagagagaagatgcagtgaattcccttgcttatgaagccgaggcacgtgtgagagatcctg |
34675427 |
T |
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| Q |
121 |
tttatggatgtgtaggagccatctcttttctacaaagacaagttcaaaggcttcaaaaggaactcgacgctgccaacaccgatcttcttcgct |
213 |
Q |
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| T |
34675428 |
tttatggttgtgttggtgctatctctttccttcagagacaagttcagagacttcaaaaggaacttgattctgctaatgccgatcttcttcgct |
34675520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 15262709 - 15262785
Alignment:
| Q |
21 |
agcaatgtcacaaagcttctcaatgaactcctccctcaccaaagggaggatgctgtgaactcccttgcttacgaagc |
97 |
Q |
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|||||||| ||||||||||||||||| | | |||||||||| | || ||||||||||| || |||||||| ||||| |
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| T |
15262709 |
agcaatgttacaaagcttctcaatgatttacaccctcaccaacgtgaagatgctgtgaattcacttgcttatgaagc |
15262785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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