View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_high_90 (Length: 237)

Name: NF6277_high_90
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_high_90
NF6277_high_90
[»] chr6 (2 HSPs)
chr6 (17-222)||(16873484-16873689)
chr6 (17-222)||(16571484-16571685)
[»] scaffold0256 (2 HSPs)
scaffold0256 (17-222)||(12030-12235)
scaffold0256 (156-222)||(14399-14465)
[»] chr2 (3 HSPs)
chr2 (24-222)||(32791581-32791778)
chr2 (39-212)||(21627849-21628022)
chr2 (29-222)||(235643-235836)
[»] chr7 (1 HSPs)
chr7 (31-222)||(48300068-48300259)
[»] chr1 (1 HSPs)
chr1 (29-222)||(7389969-7390162)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 16873689 - 16873484
Alignment:
Q  17 cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  16873689 cacatacattttaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccgcgcaactccttgtgcaagcaattctttcaacctt 16873590  T
Q  117 ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16873589 ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcaggaaaagcacataggcctaactgtgacatagccctgttaaaacgta 16873490  T
Q  217 tctgtg 222  Q
    ||||||    
T  16873489 tctgtg 16873484  T

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Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 16571685 - 16571484
Alignment:
Q  17 cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt 116  Q
    ||||||||||| ||||||||| |||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16571685 cacatacattttaaaaaagataggatttagtacctgttttggagtcttttcatgataacgactccgcgcaactccttgtgcgagcaattctttcaacctt 16571586  T
Q  117 ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta 216  Q
    ||| |  ||||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  16571585 ccagcagaataaagttcag----acagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgta 16571490  T
Q  217 tctgtg 222  Q
    ||||||    
T  16571489 tctgtg 16571484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 12030 - 12235
Alignment:
Q  17 cacatacatttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaacctt 116  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||| |||||||||| ||   ||||||||||||  |||||||||||||||||||    
T  12030 cacatacattttaaaaaagatgggatttagtacctgttctagagtcttttcatgataacgattctgtgcaactccttgtatgagcaattctttcaacctt 12129  T
Q  117 ccaccgaaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgta 216  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12130 ccaccggaataaagttcagactgacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactatgacatagccctgttaaaacgta 12229  T
Q  217 tctgtg 222  Q
    ||||||    
T  12230 tctgtg 12235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 14399 - 14465
Alignment:
Q  156 gaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg 222  Q
    ||||||| |||| |||||||||||||||  ||||| |||||||||||||||||| || |||||||||    
T  14399 gaaaccatcccatcacgaaaagcacatacacctaattgtgacatagccctgttagaatgtatctgtg 14465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 32791778 - 32791581
Alignment:
Q  24 atttgaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccga 123  Q
    |||||||||| || ||||||||||||||| | || |||||||| ||||||| ||||||  |||||||||||||||||||||||||||| ||||||||||     
T  32791778 atttgaaaaaggaagggatttagtacctgctttggagtcttttcatgataatgactccgtgcaactccttgtgcgagcaattctttcacccttccaccgg 32791679  T
Q  124 aataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg 222  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||    
T  32791678 gataaagttcagacagacagtcatgtgcttcagaaatcagcccagcacgaaaagcacatagacctaac-gtgacatagccctgttaaaaagtatctgtg 32791581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 21628022 - 21627849
Alignment:
Q  39 ggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaagttcagaca 138  Q
    ||||||| ||||||||||| ||| |||| |||||||| |||||  |||||||||||||||||||||||| ||| ||||||||||  ||||||||||||||    
T  21628022 ggatttaatacctgttctggagttttttcatgataacaactccgtgcaactccttgtgcgagcaattctctcacccttccaccgggataaagttcagaca 21627923  T
Q  139 gacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaa 212  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  21627922 gacattcatgtgcttcagaaatcagtccagcacgaaaagcacatagacctaactgtgacatagccctgttaaaa 21627849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 235643 - 235836
Alignment:
Q  29 aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa 128  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||||| |||   | ||||||||| || |||||||||||||  |  |||||  |||||    
T  235643 aaaaaagctgggatttagtacctgttctggagtcttttcatgataacggctctgtgaaactccttgcgcaagcaattctttcacacgcccaccagaataa 235742  T
Q  129 agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg 222  Q
    ||||| |||| |||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  235743 agttccgacaaacagccatgcgcttcagaaaccagcccaacccgaaaagcacatagacctaactgtgacatagccctgttaaaaagtatttgtg 235836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 48300068 - 48300259
Alignment:
Q  31 aaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataaag 130  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||  ||   | |||||||||||| |||| |||||||| || ||||||  |||||||    
T  48300068 aaaagctgggattgagtacctgttctggagtcttttcatgataacggttctgtgaaactccttgtgcaagcagttctttcacccgtccaccagaataaag 48300167  T
Q  131 ttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg 222  Q
    |||||||| |||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  48300168 ttcagacaaacagccatgtgcttcagaaaccaggccaacacgaaaagcacatagacctaactgtgacatagccctgttaaagagtatctgtg 48300259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 7390162 - 7389969
Alignment:
Q  29 aaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccacgcaactccttgtgcgagcaattctttcaaccttccaccgaaataa 128  Q
    ||||||| |||||||||||||||||||||  ||||||| ||||||||| |||   | ||||||||| || |||||||| |||| || ||||||  |||||    
T  7390162 aaaaaagctgggatttagtacctgttctggggtcttttcatgataacggctctgtgaaactccttgcgcaagcaattccttcacccgtccaccagaataa 7390063  T
Q  129 agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg 222  Q
    |||||||||| |||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  7390062 agttcagacaaacagccatgcgcttcagaaaccagcccagcccgaaaagcacaaagacctaactgtgacatagccctgttaaaaagtatttgtg 7389969  T

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