View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_1 (Length: 760)
Name: NF6277_low_1
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 1 - 760
Target Start/End: Original strand, 41103157 - 41103916
Alignment:
| Q |
1 |
agcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgtt |
100 |
Q |
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| T |
41103157 |
agcaacgacttgcgatctgatcggtgagtttgattccgacgaaaaaattgattcaatttgattccaattttctgaaatcgcttcgtataaatcaagcgtt |
41103256 |
T |
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| Q |
101 |
ctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcatcagtgcgctttctctgcaaatatcagcgaaacacgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
41103257 |
ctgaacattttctccggagttttcttgcattttgccacgttttccgggaatgcaaacagcattaatgcgctttctctgcaaatatcagcgaaacacgatt |
41103356 |
T |
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| Q |
201 |
ctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaacca |
300 |
Q |
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| T |
41103357 |
ctccgatgttgttcttctccggcgaatcgaaaatataattgcagagtattctctcgccgtgaaacagagtgttaacggcgactttgacggcgtttaacca |
41103456 |
T |
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| Q |
301 |
acacttgattttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataata |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41103457 |
acacttcattttatattcaagcatttcccagtccattttctgaatttgagaaaaactcaaattctcaactccgagattgtacaaagcttcatccataata |
41103556 |
T |
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| Q |
401 |
gattttctcacgattaagtaaatattcacacattctttactgtaaccggtgaaaatcatacactctgcaatagctttcaaatcagcaacagcagacatag |
500 |
Q |
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| T |
41103557 |
gattttctcacgattaagtaaatattcacacattctttactgtaaccggtgaaaatcatacactctgcaatagctttcaaatcagcaacagcagacatag |
41103656 |
T |
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| Q |
501 |
atactgagtctgctgcgagtgatgagccgtcgtcgtcagagaattcctcgtcagaagaactactccgacgatcagtggaagaacgaacagagatcgattc |
600 |
Q |
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| T |
41103657 |
atactgagtctgctgcgagtgatgagccgtcgtcgtcggagaattcctcgtcagaagaactactccgacgatcagtggaagaacgaaaagagatcgattc |
41103756 |
T |
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| Q |
601 |
agagtcaaatcggtctctattctgtgataatattccataaaattcattttcgagtttctttatggcgagttgcattaaggattgagcttcaacgagtttt |
700 |
Q |
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| T |
41103757 |
agagtcgaatcggtctctattctgtgataatattccataaaattcattttcgagtttctttatggcgagttgcattaaggattgagcttcaacgagtttt |
41103856 |
T |
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| Q |
701 |
ttggaggtggaatcacgtgcgacgaggtacatcatagcggattgtagactcttaacggct |
760 |
Q |
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| T |
41103857 |
ttggaggtggaatcacgtgcgacgaggtacatcatagcggattgtagactcttaacggct |
41103916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 23129044 - 23129108
Alignment:
| Q |
71 |
tctgaaatcgcttcgtataaatcaagcgttctgaacattttctccggagttttcttgcattttgc |
135 |
Q |
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| T |
23129044 |
tctgaaattgcttcgtataaatcaagagttctgaacattttctcaggagttttcttgcattttgc |
23129108 |
T |
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