View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6277_low_10 (Length: 522)

Name: NF6277_low_10
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6277_low_10
NF6277_low_10
[»] chr2 (1 HSPs)
chr2 (17-505)||(38891683-38892176)
[»] chr7 (3 HSPs)
chr7 (391-475)||(31795644-31795729)
chr7 (266-303)||(29392515-29392552)
chr7 (290-366)||(22189749-22189825)
[»] chr5 (2 HSPs)
chr5 (240-426)||(34981081-34981268)
chr5 (259-309)||(16388148-16388197)
[»] chr8 (1 HSPs)
chr8 (279-365)||(2615158-2615244)
[»] chr1 (4 HSPs)
chr1 (407-497)||(12380575-12380664)
chr1 (407-497)||(12384642-12384731)
chr1 (448-497)||(12363599-12363648)
chr1 (276-365)||(21932222-21932311)


Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 38891683 - 38892176
Alignment:
Q  17 caaaggtacaagagaaaagaaaagaaaaagttccatagaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatata-- 114  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38891683 caaaggtacaagagaaaagaaaagaaaaaattccatacaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatatata 38891782  T
Q  115 gtcccaaccttccttttcctttataatac---gtaatgtgagacttcttcaacatatatttttcaactaataccaacaatcttcatctccattgaaaatg 211  Q
    |||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38891783 gtcccaacctcccttttcctttataatactaggtaatgtgagacttcttcaacatatatttttcaactaacaccaacaatcttcatctccattgaaaatg 38891882  T
Q  212 gtacatatactgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg 311  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38891883 gtacatatattgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg 38891982  T
Q  312 aactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgca 411  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38891983 aactttcacatgtcgaaaattagtttgaaaacttatggtgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgca 38892082  T
Q  412 tcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaa 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38892083 tcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaa 38892176  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 475
Target Start/End: Original strand, 31795644 - 31795729
Alignment:
Q  391 taatctcaca-cacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacat 475  Q
    |||||||||| ||||||||| |||||| |||| |||||  | ||||||||  ||||||||||||||| ||||||||||||||||||    
T  31795644 taatctcacaacacactttgtatcaatgtcaaccaatgcgcgtgtactaatcaacaccttgtgtaatcttgattgtatcaacacat 31795729  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 29392552 - 29392515
Alignment:
Q  266 atccaccataaagagtatattttacttgaagttaaacc 303  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  29392552 atccaccataaagggtatactttacttgaagttaaacc 29392515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 22189749 - 22189825
Alignment:
Q  290 cttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttga 366  Q
    |||| |||||||||||| || ||| |||||||| | |||||| || ||||||||||| |  ||| ||||||||||||    
T  22189749 cttgtagttaaaccacttcaagaattttcacatatcgaaaatgaggttgaaaacttaaggagcaacttccatgttga 22189825  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 426
Target Start/End: Original strand, 34981081 - 34981268
Alignment:
Q  240 caatcatcattcaaaa-aactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttg 338  Q
    |||||||  ||||||| |||||||||| |||| |||||| | |||| || ||| ||| |||||||||||||  || ||||||||||  ||||| |   |     
T  34981081 caatcatagttcaaaagaactatcatactccatcataaaaaatatacttcactcgaatttaaaccactccaataattttcacatgtcaaaaatcatgcta 34981180  T
Q  339 aaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatcaatttcaatcaat 426  Q
    |||||||||  |||| ||||||| ||| ||||||| | |||||   | ||  |||||||| ||||||||||||||||| |||||||||    
T  34981181 aaaacttatcgtgcaacttccatattggttgaaaactcttcaaccactgacataatctcaaacacactttgcatcaatgtcaatcaat 34981268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 16388197 - 16388148
Alignment:
Q  259 tatcataatccaccataaagagtatattttacttgaagttaaaccactcca 309  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||||||||    
T  16388197 tatcatactccaccataaagagtata-atcacttgaagttaaaccactcca 16388148  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 2615158 - 2615244
Alignment:
Q  279 agtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 365  Q
    |||||| |||||||||||||||| ||||||| ||| ||| |||||||||||||  |  ||||||||||| ||||| ||| |||||||    
T  2615158 agtatactttacttgaagttaaaacactccaagaatttttacatgttgaaaatccggctgaaaacttataatgcaactttcatgttg 2615244  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 497
Target Start/End: Complemental strand, 12380664 - 12380575
Alignment:
Q  407 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 497  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12380664 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12380575  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 497
Target Start/End: Complemental strand, 12384731 - 12384642
Alignment:
Q  407 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 497  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12384731 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12384642  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 12363648 - 12363599
Alignment:
Q  448 ttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 497  Q
    ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12363648 ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12363599  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 21932222 - 21932311
Alignment:
Q  276 aagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 365  Q
    ||||||||| || |||||||||| ||| | | || |||||||||||||| |||| | |  ||||||||||||  |||| |||||||||||    
T  21932222 aagagtatacttcacttgaagttgaactatttcaagaactttcacatgtcgaaattcaagttgaaaacttattgtgcaacttccatgttg 21932311  T

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