View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6277_low_11 (Length: 521)
Name: NF6277_low_11
Description: NF6277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6277_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 1230266 - 1229773
Alignment:
| Q |
18 |
atattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttgattcatt |
117 |
Q |
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| T |
1230266 |
atattaaatttgtttgcaaattctaactactatttaatttcattttagtaactcaatcctcacatttaaaaatatataccaatatattgtttgattcatt |
1230167 |
T |
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| Q |
118 |
ttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcctctagaa |
217 |
Q |
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| T |
1230166 |
ttattgacattgaagagatacaaacaatagaaaaacttccattttgcaatgaaaatagtggtaccttgctacacctctgtattttgagactcctctagaa |
1230067 |
T |
|
| Q |
218 |
aatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatcaacctctc |
317 |
Q |
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| T |
1230066 |
aatccactgctttttctacaaatcgaaaactattaatcaaaatcaaaatcatatatacacaccatcataaaagttactcagtatctctgatcaatctctc |
1229967 |
T |
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| Q |
318 |
catcgaagttgttgtattaatttaatggccaaaaatattatattatggtcaaccattagacttaattcaacaaatttgatgtgattagaaagatgtctga |
417 |
Q |
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| T |
1229966 |
catcgaagttgttgtattaatctaatggccaaaaatattatattatggtcaaccattagacttaatccaacgactttgatgtgattagaaagatgttcga |
1229867 |
T |
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| Q |
418 |
gtttgcggagaatcatatattataagaattttaatgaccaaaccttcttaaggatccaatatattcttcttttgattggccttccatccctttg |
511 |
Q |
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| T |
1229866 |
ttttacggagaatcatatattataaggattttagtgaccaaaccttcttaaggatccgatatattcttcttttgattggccttccatccctttg |
1229773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 24989937 - 24989983
Alignment:
| Q |
179 |
taccttgctacacctctgtattttgagactcctctagaaaatccact |
225 |
Q |
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| T |
24989937 |
taccttgctactcctctatattttgatacacctctagaaaatccact |
24989983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 2051772 - 2051718
Alignment:
| Q |
180 |
accttgctacacctctgtattttgagactcctctagaaaatccactgctttttct |
234 |
Q |
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| T |
2051772 |
accttgcaacacctctatactttgagacacctcttgaaaagccactgctttttct |
2051718 |
T |
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